BAC Information

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BAC

Clone NameMSMg01-514H06
Chromosome14 (Build37)
Map Location 91,053,601 - 91,224,655
singlet/doubletdoublet
Overlap genenone
Upstream geneEG328451, LOC100043336
Downstream geneEG639558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514H06.T7 (MSMg01no514_h06.b1)MSMg01-514H06.TJ (MSMg01no514_h06.g1)
ACCAG586934AG586935
length738751
length of high quality
(start - end)		646 (46 - 691)489 (74 - 562)
definitionCHROMAT_FILE: MSMg01no514_h06.b1 PHD_FILE: MSMg01no514_h06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:22 2005CHROMAT_FILE: MSMg01no514_h06.g1 PHD_FILE: MSMg01no514_h06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,053,601 - 91,054,242)(91,224,240 - 91,224,655)
sequence
CCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCAGTTGTCTGGATCATTGGTCAGCCATTCCTTCAGTCTGTGCTA
CATTTTTATCCATGCATTTCTTTTAGACAGGAGCGATTTGGGGTCGAAAG
TTTTCTAGGTGCTTTTTTGACCCCATCCCTTTACTTGAATTCCTCTCTGA
CTACTGAAGATAGTTTCTTCAAGTTTCATTTTTTTTTGTTTAGAAGGATA
ATTTTTAGAGAAGGTATCTGAAATTTCAGAGATATTTTTTAACAAGAAAA
AAGTAAGTTACATCATTCTAGAGTATTATGATCCCTTCAGTAGAACATTT
GAAATAAGCTTAAAACAGTTACATTTATCCTTACGGTTGCTTCAAATATT
TATATTCAATACTATCATTGTTATACAAGGTTTCTTTTTGCTAATATTGG
CTTAATCTGTCATTATTTGTTGACTATAATTTTCTAACTTTAAGTGCTTT
GTGTTTGTATGTGTGTGGGATTTTCTGTGGGGGATTTTGTTCATTTTAAA
TTAATTAATTAATATATTTATTTATTTAATAACTTTTGAGGTAGCATCAC
CTCTATCTCAGCCTGGCACCTTCTATGTAAAAAAGGTTTAACTGAGTCTG
TGCACAACTCTAATCGCCACTGCCCTAGTACCAGGATTACAGGTATGTGT
GCCATTCTGGCATCTTTTATATATTGGTTTATCTGGGG

ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCAGATCTCCATTTGCCTGAGAATATT
AACCAGAAAAGATAGTTTAAAAAGCAAATTTATAAATGATTACCTGATGC
CATTAAGTTGTCATTGTTTATGGACATTGGTTAGAATGCTTGTCTAATAA
GGTTTAGAGGAACATCTACAGCAAAATAAATAAGTAAAGATTTTTTTCAT
ATAGGAAACAATTTAAAACTCATGATTGGAATTACAATTTAAGTGAGTAC
ATACCATATATGTTCCTTTGGGCCTGGGTTACCTCACTCAGGATATGCCC
AAGTTCTATGCATTTGCCTGACAAATTCATAATGTCTTTGATTTTAATAG
CTGAATAATGTTCCATTGTGTAGATTACCATATTTTCTTTATTTATTCTT
TATTTGTAGGATATGATATGCCAGGTTGGGAAGATACTCAGGCCTGGGAA
TTCATTCACCCTTTCAGAGATGAAGGGGAGTAGAGAATGGGGGAGGGGCT
ATGTGAAGGGAGATTAAGGAGGTGGGCAATATAGTGTATGATTATATGGA
AGATTTTTTTTGTTATAATGTTATTTTTTTTTTTTGTTTTTTTTTTGTAA
TTTTTTATTATTATGTTATTTTATTTTTTTAATGTTTATTTTTTTTTGTA
ATGTTATTATTATTTATTATTGATATTTTTTTATTATTGTTTATATTTTT
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_h06.b1 MSMg01no514_h06.b1 CHROMAT_FILE:
MSMg01no514_h06.b1 PHD_FILE: MSMg01no514_h06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:22 2005
         (646 letters)



>mm_chr14_91053397_91054442
          Length = 1046

 Score = 1234 bits (638), Expect = 0.0
 Identities = 641/642 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccagttgtctggatcattggtcagccattccttcagtctgtgctacatttttat 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccagttggctggatcattggtcagccattccttcagtctgtgctacatttttat 264

                                                                       
Query: 65  ccatgcatttcttttagacaggagcgatttggggtcgaaagttttctaggtgcttttttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccatgcatttcttttagacaggagcgatttggggtcgaaagttttctaggtgcttttttg 324

                                                                       
Query: 125 accccatccctttacttgaattcctctctgactactgaagatagtttcttcaagtttcat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 accccatccctttacttgaattcctctctgactactgaagatagtttcttcaagtttcat 384

                                                                       
Query: 185 ttttttttgtttagaaggataatttttagagaaggtatctgaaatttcagagatattttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttttttttgtttagaaggataatttttagagaaggtatctgaaatttcagagatattttt 444

                                                                       
Query: 245 taacaagaaaaaagtaagttacatcattctagagtattatgatcccttcagtagaacatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taacaagaaaaaagtaagttacatcattctagagtattatgatcccttcagtagaacatt 504

                                                                       
Query: 305 tgaaataagcttaaaacagttacatttatccttacggttgcttcaaatatttatattcaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgaaataagcttaaaacagttacatttatccttacggttgcttcaaatatttatattcaa 564

                                                                       
Query: 365 tactatcattgttatacaaggtttctttttgctaatattggcttaatctgtcattatttg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tactatcattgttatacaaggtttctttttgctaatattggcttaatctgtcattatttg 624

                                                                       
Query: 425 ttgactataattttctaactttaagtgctttgtgtttgtatgtgtgtgggattttctgtg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttgactataattttctaactttaagtgctttgtgtttgtatgtgtgtgggattttctgtg 684

                                                                       
Query: 485 ggggattttgttcattttaaattaattaattaatatatttatttatttaataacttttga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggggattttgttcattttaaattaattaattaatatatttatttatttaataacttttga 744

                                                                       
Query: 545 ggtagcatcacctctatctcagcctggcaccttctatgtaaaaaaggtttaactgagtct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ggtagcatcacctctatctcagcctggcaccttctatgtaaaaaaggtttaactgagtct 804

                                                     
Query: 605 gtgcacaactctaatcgccactgccctagtaccaggattaca 646
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gtgcacaactctaatcgccactgccctagtaccaggattaca 846


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no514_h06.g1 MSMg01no514_h06.g1 CHROMAT_FILE:
MSMg01no514_h06.g1 PHD_FILE: MSMg01no514_h06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:22 2005
         (489 letters)



>mm_chr14_91224240_91225128
          Length = 889

 Score =  804 bits (416), Expect = 0.0
 Identities = 416/416 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagatctccatttgcctgagaatattaaccagaaaagatagtttaaaaagcaaatttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tcagatctccatttgcctgagaatattaaccagaaaagatagtttaaaaagcaaatttat 357

                                                                       
Query: 61  aaatgattacctgatgccattaagttgtcattgtttatggacattggttagaatgcttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aaatgattacctgatgccattaagttgtcattgtttatggacattggttagaatgcttgt 297

                                                                       
Query: 121 ctaataaggtttagaggaacatctacagcaaaataaataagtaaagatttttttcatata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ctaataaggtttagaggaacatctacagcaaaataaataagtaaagatttttttcatata 237

                                                                       
Query: 181 ggaaacaatttaaaactcatgattggaattacaatttaagtgagtacataccatatatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 ggaaacaatttaaaactcatgattggaattacaatttaagtgagtacataccatatatgt 177

                                                                       
Query: 241 tcctttgggcctgggttacctcactcaggatatgcccaagttctatgcatttgcctgaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 tcctttgggcctgggttacctcactcaggatatgcccaagttctatgcatttgcctgaca 117

                                                                       
Query: 301 aattcataatgtctttgattttaatagctgaataatgttccattgtgtagattaccatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 aattcataatgtctttgattttaatagctgaataatgttccattgtgtagattaccatat 57

                                                                   
Query: 361 tttctttatttattctttatttgtaggatatgatatgccaggttgggaagatactc 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56  tttctttatttattctttatttgtaggatatgatatgccaggttgggaagatactc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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