BAC Information

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BAC

Clone NameMSMg01-515H18
Chromosome14 (Build37)
Map Location 97,894,949 - 97,926,593
singlet/doubletdoublet
Overlap genenone
Upstream geneKlhl1, LOC100043366, LOC668654
Downstream geneEG668659, Dach1, LOC635593
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515H18.T7 (MSMg01no515_h18.b1)MSMg01-515H18.TJ (MSMg01no515_h18.g1)
ACCAG587712AG587713
length758754
length of high quality
(start - end)		665 (50 - 714)666 (79 - 744)
definitionCHROMAT_FILE: MSMg01no515_h18.b1 PHD_FILE: MSMg01no515_h18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:49 2005CHROMAT_FILE: MSMg01no515_h18.g1 PHD_FILE: MSMg01no515_h18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,925,933 - 97,926,593)(97,894,949 - 97,895,614)
sequence
NNNAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATCACAATTAGAGGCTATATTATTAATTGATGGTTGCTGAG
AGAGAGACCATCACTTCCTTTGGCAACATAGCCACTTCTAGGTTGCTTAT
GACCTATTGCACTGTCATTCACCCAATGCTCATATGGGCATCACTAATTG
GATTCTGCATGATAGTAATGACAAGAAACAAACAGGTCATAAAGTCTGGT
TGGAGACAGGGTGTACAGGGCACAAAAGAGTTTGGAGGGAGTCTGTGGTA
GATGAATCGAATTGTTATTCATTTTATAAGTGCATAAAATTTTTATGGGG
TGAAAAATTTAAATGTATAAGTAAATTAAAACTCATTTAATTATAAAGAT
GTAACTAGACTATAGTTTTTTAGCAATTTTAAGAAAGTCTCACTTTTTTA
ATTACTCAGTTGTGTTTGTGGTATGTGTGTGTGTGTGTGTGTGTGTGTAT
GTGTAGACATGCATGCACATGTGCATATCTATGTCCTTGTGAGTACCTGA
ACATTACAGAAGAGGGCATAGAATCCTTTAGAGCTGGAGTTATACTTGTC
TGTGTGTTGATTGATGCCCTCTGAAGGAAGAACAAGTGATTTGTGTGTGT
GTGTGTTTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGCAAGTATAAGT
GGTATGTTATTCATGAGGAGTTCAAAGGATAATTTGAGCAAGTCATTCCT
CTTCTTCC

NNNNCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCGTCTCCACTTCCCGTTTT
GTTGTAGGTGTACTGAGTTCATAGAAATATGCTATCCTTCCCAGGGTTGT
GTGGATTCTCGGGATTTGAACTCAGTTTCTTGTGATTGATGGCAACACGT
TGACCCTTTTATCCATCTCTCTCATTCAAATCTAACCATTTCTAGTACCT
CGTAGAATATTCAGATAGTACTGAGAACAAAGGAAGTGTTTGTGAAAAAT
CCTAGAAAGTACACCAATATCATTCTATTGAGTAATTATACAAAAAGTTA
ACATGATAAAGTTTGCATTATACATGTTTTATTATAAAATTTAAAGATAA
TTTATAGTGAAAAATAATGGTATTTTAGTATTAAAATACTGAAAGTGGCT
TGAAAATCATTCCATAAATATCTTGTCTTCACTGTATTTAATTACTTTCA
TTTCTGTGTCCAAGACATACTGGCTAAGTTCTCATATGTTCAATAATTCA
ATAATCAAATTAAAACTTTCCAGGAAAGTGTACTTTCTCTTCCATTTCAG
GCCTTCCTCTTCTTCTTGGAAATAGTCTAATTGTGTATTACTGCATAATC
TTCCACACAGACAGGGAGATCTGTTTCACATTCAAATTCCCATTTGGTTT
TAATATCTGAGAGTCCTGAGCCTGTCTATATGATACAGTCTGAAAGGCAG
ACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_h18.b1 MSMg01no515_h18.b1 CHROMAT_FILE:
MSMg01no515_h18.b1 PHD_FILE: MSMg01no515_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:49 2005
         (665 letters)



>mm_chr14_97925691_97926755
          Length = 1065

 Score = 1278 bits (661), Expect = 0.0
 Identities = 661/661 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatcacaattagaggctatattattaattgatggttgctgagagagagaccatca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 gaattcatcacaattagaggctatattattaattgatggttgctgagagagagaccatca 844

                                                                       
Query: 65  cttcctttggcaacatagccacttctaggttgcttatgacctattgcactgtcattcacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 cttcctttggcaacatagccacttctaggttgcttatgacctattgcactgtcattcacc 784

                                                                       
Query: 125 caatgctcatatgggcatcactaattggattctgcatgatagtaatgacaagaaacaaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 caatgctcatatgggcatcactaattggattctgcatgatagtaatgacaagaaacaaac 724

                                                                       
Query: 185 aggtcataaagtctggttggagacagggtgtacagggcacaaaagagtttggagggagtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 aggtcataaagtctggttggagacagggtgtacagggcacaaaagagtttggagggagtc 664

                                                                       
Query: 245 tgtggtagatgaatcgaattgttattcattttataagtgcataaaatttttatggggtga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 tgtggtagatgaatcgaattgttattcattttataagtgcataaaatttttatggggtga 604

                                                                       
Query: 305 aaaatttaaatgtataagtaaattaaaactcatttaattataaagatgtaactagactat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 aaaatttaaatgtataagtaaattaaaactcatttaattataaagatgtaactagactat 544

                                                                       
Query: 365 agttttttagcaattttaagaaagtctcacttttttaattactcagttgtgtttgtggta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 agttttttagcaattttaagaaagtctcacttttttaattactcagttgtgtttgtggta 484

                                                                       
Query: 425 tgtgtgtgtgtgtgtgtgtgtgtgtatgtgtagacatgcatgcacatgtgcatatctatg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tgtgtgtgtgtgtgtgtgtgtgtgtatgtgtagacatgcatgcacatgtgcatatctatg 424

                                                                       
Query: 485 tccttgtgagtacctgaacattacagaagagggcatagaatcctttagagctggagttat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tccttgtgagtacctgaacattacagaagagggcatagaatcctttagagctggagttat 364

                                                                       
Query: 545 acttgtctgtgtgttgattgatgccctctgaaggaagaacaagtgatttgtgtgtgtgtg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 acttgtctgtgtgttgattgatgccctctgaaggaagaacaagtgatttgtgtgtgtgtg 304

                                                                       
Query: 605 tgtttgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgcaagtataagtggtatgttattca 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tgtttgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgcaagtataagtggtatgttattca 244

            
Query: 665 t 665
           |
Sbjct: 243 t 243


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no515_h18.g1 MSMg01no515_h18.g1 CHROMAT_FILE:
MSMg01no515_h18.g1 PHD_FILE: MSMg01no515_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:49 2005
         (666 letters)



>mm_chr14_97894749_97895814
          Length = 1066

 Score = 1288 bits (666), Expect = 0.0
 Identities = 666/666 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccgtctccacttcccgttttgttgtaggtgtactgagttcatagaaatatgctatcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcccgtctccacttcccgttttgttgtaggtgtactgagttcatagaaatatgctatcct 260

                                                                       
Query: 61  tcccagggttgtgtggattctcgggatttgaactcagtttcttgtgattgatggcaacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcccagggttgtgtggattctcgggatttgaactcagtttcttgtgattgatggcaacac 320

                                                                       
Query: 121 gttgacccttttatccatctctctcattcaaatctaaccatttctagtacctcgtagaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttgacccttttatccatctctctcattcaaatctaaccatttctagtacctcgtagaat 380

                                                                       
Query: 181 attcagatagtactgagaacaaaggaagtgtttgtgaaaaatcctagaaagtacaccaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attcagatagtactgagaacaaaggaagtgtttgtgaaaaatcctagaaagtacaccaat 440

                                                                       
Query: 241 atcattctattgagtaattatacaaaaagttaacatgataaagtttgcattatacatgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcattctattgagtaattatacaaaaagttaacatgataaagtttgcattatacatgtt 500

                                                                       
Query: 301 ttattataaaatttaaagataatttatagtgaaaaataatggtattttagtattaaaata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttattataaaatttaaagataatttatagtgaaaaataatggtattttagtattaaaata 560

                                                                       
Query: 361 ctgaaagtggcttgaaaatcattccataaatatcttgtcttcactgtatttaattacttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgaaagtggcttgaaaatcattccataaatatcttgtcttcactgtatttaattacttt 620

                                                                       
Query: 421 catttctgtgtccaagacatactggctaagttctcatatgttcaataattcaataatcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catttctgtgtccaagacatactggctaagttctcatatgttcaataattcaataatcaa 680

                                                                       
Query: 481 attaaaactttccaggaaagtgtactttctcttccatttcaggccttcctcttcttcttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attaaaactttccaggaaagtgtactttctcttccatttcaggccttcctcttcttcttg 740

                                                                       
Query: 541 gaaatagtctaattgtgtattactgcataatcttccacacagacagggagatctgtttca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaaatagtctaattgtgtattactgcataatcttccacacagacagggagatctgtttca 800

                                                                       
Query: 601 cattcaaattcccatttggttttaatatctgagagtcctgagcctgtctatatgatacag 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cattcaaattcccatttggttttaatatctgagagtcctgagcctgtctatatgatacag 860

                 
Query: 661 tctgaa 666
           ||||||
Sbjct: 861 tctgaa 866


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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