BAC Information

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BAC

Clone NameMSMg01-515H23
Chromosome14 (Build37)
Map Location 91,271,945 - 91,272,370
singlet/doubletsinglet
Overlap genenone
Upstream geneEG328451, LOC100043336
Downstream geneEG639558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515H23.T7 (MSMg01no515_h23.b1)MSMg01-515H23.TJ (MSMg01no515_h23.g1)
ACCAG587722AG587723
length998788
length of high quality
(start - end)		---426 (84 - 509)
definitionCHROMAT_FILE: MSMg01no515_h23.b1 PHD_FILE: MSMg01no515_h23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:50 2005CHROMAT_FILE: MSMg01no515_h23.g1 PHD_FILE: MSMg01no515_h23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTACACAACCCTTNGTCGCCATACCCAAGGAAATATTCATTTAATCAC
AAAGAAGGAATGNNGNGTCACTCTTCCCACAAAGAATTGGGTTGGGATGG
GTTTGGGGTGCGTATTGGGTTCGGCTAAATGTTTGCGCTCGGCAACAAAC
CCCAAATAAGCAAATAACGCAGCCTTTCCATCTACATACCATTCTATACT
CACACGTCCCCCTTACCAACCACTCTCCACAACAAAAACCAACCCACTAT
TCTCTTTTATACAAACCCATCCCATAACTAAATAATTTATTAATTTCATC
AAAATTATACATATTATATACAACACACTTCCCACTATTCATAACAACCT
TCAACCTTTAATCTATTAGCTNTNTTCATTACTATCNCAACCCCACTCCC
TCACCCTTTTTTTTTCTTCACCTCTCTTACACTATCTTCTTTATTCCACA
CCTTAAATACACTTCTCTATCTTCGACTCTATCTCTTTTTCTCCATCTAT
TTTTACTTCAATAACATCTGTTTCTTCTATTTCCTCCAACNAATCAAAAC
ATCACATCACTTTCAACTTTTNCATCATCTTAACCCCCCTAATAACAATC
ATTTACACAACTCTAACTCACTAAACAAAACACGTTATTTCTCTNCGTTC
TTTCTCCCCTACTTAGCCTATATCCTATTACATCATTTTTACCTCACACT
CTAACCTTCTCCCACACCTCCACCAACATCACTATCCTCTATCTCTCCTT
CTCACATCATATTATCAATCCCATCTCATCATACCTCTCCTTTACATATA
CCATACCCAATCTATCATCACAAAATATACTATCTTCTACACATCATCTT
CAAATACCCCACTTACATATTACTCTTTATTCCTCCTCTTTTCTCCCTAC
TCTTCATAACTCCACTATCTATAATCTACCATTATCATCCCACATTCACC
TCAACTTATTATACATCACCATACAACACCCAAACACACTTTATTCAC

NNNNNTTCCATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATAGGCATGAAGGAAT
AAAAAGAATCCAGAGGACTGATGAGACAAAAACAAATATGATGAGGTAAT
TAATCAAAAACAAATAGAAAGTTATGAGTAAATCGATGCGAAGTACTATA
ATTGCCTAAGTAAAGCAAAATTGTTACCCTTGTTTAAATCTCTGCTGATT
ATCATGTGATCAGATATGATTTGTAGAATTCAGAGAAGTGCTAAGTGATT
GGCATGGCATTTTGAAAGATTAAAACCATAGAATAAGACTTTAAAAATGG
TATTTGAAAGTGTTCAGAGTGCATTAGGGTCACTTGGAGTATAAATTAAT
GGCATATAACTAAATAACTGAATAACTTAAAATTTAAAATATCTTTGTAT
ATTTACTCAGGTGTTTTTTTTTGTTTGTTTTTTTTGTTTGTTTTTTTTTG
TTTTGTTTTGTTTTTTTGTTGTTGTTGTTTTTGCATTTAGCTGAAACCAT
AGTAAGTTTCTTGTCTTTTTTCATTAGATTTCAATGTGAGTGCAAAGGGG
GAAGATAGACAAAATTGAGAAGTATTATTGCATTTTTAATAGAAAAGTTA
TTACAAATATTCTGCTATTTACACAGGGCCCCCAATGGAGGAGCTAGAGA
AAGTACCAAGGAGCTAAAGGGGTCTGCGACCCTATAGGGGGACAACAATA
TGAACTAACAGTACCCCAGAACTCATGTCTCTAACTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_h23.g1 MSMg01no515_h23.g1 CHROMAT_FILE:
MSMg01no515_h23.g1 PHD_FILE: MSMg01no515_h23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:50 2005
         (426 letters)



>mm_chr14_91271793_91272618
          Length = 826

 Score =  816 bits (422), Expect = 0.0
 Identities = 425/426 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cataggcatgaaggaataaaaagaatccagaggactgatgagacaaaaacaaatatgatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 cataggcatgaaggaataaaaagaatccagaggactgatgagacaaaaacaaatatgatg 519

                                                                       
Query: 61  aggtaattaatcaaaaacaaatagaaagttatgagtaaatcgatgcgaagtactataatt 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 aggtgattaatcaaaaacaaatagaaagttatgagtaaatcgatgcgaagtactataatt 459

                                                                       
Query: 121 gcctaagtaaagcaaaattgttacccttgtttaaatctctgctgattatcatgtgatcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gcctaagtaaagcaaaattgttacccttgtttaaatctctgctgattatcatgtgatcag 399

                                                                       
Query: 181 atatgatttgtagaattcagagaagtgctaagtgattggcatggcattttgaaagattaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 atatgatttgtagaattcagagaagtgctaagtgattggcatggcattttgaaagattaa 339

                                                                       
Query: 241 aaccatagaataagactttaaaaatggtatttgaaagtgttcagagtgcattagggtcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aaccatagaataagactttaaaaatggtatttgaaagtgttcagagtgcattagggtcac 279

                                                                       
Query: 301 ttggagtataaattaatggcatataactaaataactgaataacttaaaatttaaaatatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ttggagtataaattaatggcatataactaaataactgaataacttaaaatttaaaatatc 219

                                                                       
Query: 361 tttgtatatttactcaggtgtttttttttgtttgttttttttgtttgtttttttttgttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 tttgtatatttactcaggtgtttttttttgtttgttttttttgtttgtttttttttgttt 159

                 
Query: 421 tgtttt 426
           ||||||
Sbjct: 158 tgtttt 153


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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