Query= MSMg01no515_l22.b1 MSMg01no515_l22.b1 CHROMAT_FILE:
MSMg01no515_l22.b1 PHD_FILE: MSMg01no515_l22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:11 2005
(587 letters)
>mm_chr14_100356160_100357146
Length = 987
Score = 969 bits (501), Expect = 0.0
Identities = 562/587 (95%), Gaps = 9/587 (1%)
Strand = Plus / Plus
Query: 4 ggaattcaagtgactattaatgatgtactgttgtactcacagatcagtgcctcacccaac 63
|||||||||||||||||||| |||||| || ||||| |||||||||||||||||||||||
Sbjct: 201 ggaattcaagtgactattaaggatgtattgctgtacccacagatcagtgcctcacccaac 260
Query: 64 atcattagagaggcttttccttgaaatagtt---aattgacagagagacctagaactcca 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 atcattagagaggcttttccttgaaatagttgttaattgacagagagacctagaactcca 320
Query: 121 caatgtgcagacagtgagaggctcaggggtgctctgctcagccctgtattggatgtcgtc 180
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 caatgtgcagacagcgagaggcccaggggtgctctgctcagccctgtattggatgtcgtc 380
Query: 181 atcaaactcttctcttcgagaatcatggatctatgtagaagatgagtcaggaaggttgta 240
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 atcaaactcttcttttcgagaatcatggatctatgtagaagatgaggcaggaaggttgta 440
Query: 241 aagagtcagagattttgatgattccatggaaaaagctccttgtaggtacaacaggactgt 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagagtcagaggttttgatgattccatggaaaaagctccttgtaggtacaacaggactgt 500
Query: 301 gcacacgggaacttatagagactacagtgtaaaaatataaaggtaaggatgatttttaaa 360
||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 501 gcacacgtgaacttatagagactacagtgtaagaataaaaaggtaaggatgatttttaaa 560
Query: 361 ataagaagctctgacctatatgatgtctcccatcctcctttccaccctctccttggcctc 420
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 aaaagaagctctgacctatatgatgtctcccatcctccttcccaccctctccttggcctc 620
Query: 421 ttatctttaaactacacacacacacacacacacacacacacacacacacacacacacaca 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttatctttaaactacacacacacacacacacacacacacacacacacacacacacac--- 677
Query: 481 cacctcaaataaaatggaaccagaagcaccaagtgtctttgttttaatttgttttctttg 540
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 678 ---ctcaaataaaatggaaccagaagcaccaagtgtctttgttttattttgttttctttg 734
Query: 541 ttaggtggagatggtcaatggaaacagaagatgctaacaagtgagac 587
|||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 735 ttaggtggagatggtcaatgaaaacagaagatgctaacaagtgagac 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no515_l22.g1 MSMg01no515_l22.g1 CHROMAT_FILE:
MSMg01no515_l22.g1 PHD_FILE: MSMg01no515_l22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:11 2005
(597 letters)
>mm_chr14_100519157_100520153
Length = 997
Score = 1131 bits (585), Expect = 0.0
Identities = 594/597 (99%)
Strand = Plus / Minus
Query: 1 ctctttgttttgttaggaacagtggtgacctcgaagcttcatgcatgctggtcaggaaat 60
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 797 ctctttgttttgttaggaacagtggtgaacttgaagcttcatgcatgctggtcaggaaat 738
Query: 61 aggaagtctcagaagatatttttagttcttccaaaaatgaccactggtgggaacctattc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aggaagtctcagaagatatttttagttcttccaaaaatgaccactggtgggaacctattc 678
Query: 121 tttttccttcagtaactcttcatgaattttcttatttagaatctttgatattagtatata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tttttccttcagtaactcttcatgaattttcttatttagaatctttgatattagtatata 618
Query: 181 atctgaggatgtggcttagcgatcagaggttcaagggagtcaaagtactacataaacgca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 atctgaggatgtggcttagcgatcagaggttcaagggagtcaaagtactacataaacgca 558
Query: 241 aaacctctaaatgtaatcattgccagaaactctcatttaaaagcaatctgacagctgtca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aaacctctaaatgtaatcattgccagaaactctcatttaaaagcaatctgacagctgtca 498
Query: 301 atcacatacaaatatataatgtatcaatatatatttcctcagagaagagtggcaaaaaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 atcacatacaaatatataatgtatcaatatatatttcctcagagaagagtggcaaaaaat 438
Query: 361 gatttttccataataacaaaatgttttaaatgccaccctgggctactctgcagtagaggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gatttttccataataacaaaatgttttaaatgccaccctgggctactctgcagtagaggg 378
Query: 421 aaatgtgtttggtctttgttttcttttctgctacaatggtaaatatttagtataagtttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aaatgtgtttggtctttgttttcttttctgctacaatggtaaatatttagtataagtttc 318
Query: 481 tatagagtcttctagaacagggaatgcttatgtcatgcccagattagacatcattagacc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tatagagtcttctagaacagggaatgcttatgtcatgcccagattagacatcattagacc 258
Query: 541 tctctctgctatgataagtgcaaacatctatcgagaacctacttgaagcagtctagc 597
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 257 tctctctgctatgataagtgcaaacaactatcgagaacctacttgaagcagtctagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
