BAC Information

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BAC

Clone NameMSMg01-515L24
Chromosome14 (Build37)
Map Location 48,559,747 - 48,692,806
singlet/doubletdoublet
Overlap gene4930447J18Rik
Upstream geneSamd4, Gch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1
Downstream geneMap1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972, Exoc5, 4932432K03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515L24.T7 (MSMg01no515_l24.b1)MSMg01-515L24.TJ (MSMg01no515_l24.g1)
ACCAG587912AG587913
length785851
length of high quality
(start - end)		545 (53 - 597)158 (83 - 240)
definitionCHROMAT_FILE: MSMg01no515_l24.b1 PHD_FILE: MSMg01no515_l24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:11 2005CHROMAT_FILE: MSMg01no515_l24.g1 PHD_FILE: MSMg01no515_l24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,559,747 - 48,560,288)(48,692,654 - 48,692,806)
sequence
NNNNACCATTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTTGGCTCCTGATTGCCAGGATACCTCGAGCAGCAGAG
CTGTAAACTCTTTGGCTGGGGAAACCATCCCTTGCTGAAGCTGTTACACT
GTGTTGGGGGAGTATCTCCTGCAGCAGCTGGAGCAGAGCAGTAACACTCC
TGTAGGGAAGCCTTGCCCTTCACAGCCTTTACAGTTTGGCTTTGAGACAG
ATGAAAAAAGGAAAAAGGTCAAGAAGGCTCTTTCTGAGATAGATGACCTG
CTGCGGGATTCAGGCTGCGCCCTGCTCATGCTGAAGTCAGGGCACAATTC
CTCCACACTGTGTGAAACAGTGCCTTTCAGGCGGAGCTTTGCCCTGGGTG
ACTCTATTCACCAAGCAGCAGTTGACTCTGAGTACAAACGCAGAGGAAAG
CTGAGTTAGACCACATCCTTGTGCATGCAGGCACCATGAGACCAGCACAA
ACTACAAGGCACAGACTGATCAGACTGCAGCAAGTCAAAAGGTACCCTGT
CAGAGCTTACTATGTAGGTTGGGAATGTGGAGGTAAAGTCATATCAGAAA
AGCCAGGCTCAGTAACTCAGACACAACAGGCCAGTGAAGGATATATATAT
AGCACTCACATAAAATGATTCCCACAAAAAAGGTTCATGGTACACTCCGA
TGACCAAAGCCCCCTGATCTGTCACCTATCCACAGGGCTTCAGCTCAGCA
TGGGTCCCAATGGTCAGTACAAACCTCTGGAGCTG

ATTTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATGGAACTTGCAAGGG
AAGGAGAGCTCTGTAAACCACCCCAGTTGGATTCGGTGTTTGTTCCATAG
TTTATCCTTGGGTTTTGTGCTTTGCTTTTTGTTTGCTTGTTTGTTTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTATNATTTTNTTTAT
TAATTTTATTATAATTTATATTTTTTTATTTTTTATTTTNTATATTNTTT
TTATTTTTTATTTTTTTTTTTTTTTATTTTTTTTTTTTTTATTTTTTTTA
AATTTTTTTTTTTATTATATAATTTTCTTTATTTTTTTTATTATTTTTAT
TTTATTTTTTTTTTTTTTTTTTTTTTTTATTATCTCAATTTATAATTATT
TTATATATTTTTTAATTTATTTTTATTTTATTTATAATATNTTTATATTT
TTATATCNTAATATTTTTTCCTTTTTATTTTTTGTTTCTCATTTTTTTAT
TTTCTTTACTATTATATAACCTCTTTTTCTCCTTCCACTTTTCTACATTT
AATTCACTTCATATCTATTATTTATTTTACCGCTACTACCCATCTCTTTC
TTGCTCATATATTATCTTTAAATTACGATCTATTCAAGTAACACTTTCTT
CTTCTCCCTTTGCTGGCTTACTGTATGGTACTTTACAATATTCATCTCTC
TCGTCTCGTGTATATTATTCTGTCGCTTTTATTCTCCTTCGTAATTCTTT
CTATACCTTTCTGTTTTTTTATTTATATGTGATTTACTCTTTGTGTCTAC
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_l24.b1 MSMg01no515_l24.b1 CHROMAT_FILE:
MSMg01no515_l24.b1 PHD_FILE: MSMg01no515_l24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:11 2005
         (545 letters)



>mm_chr14_48559544_48560488
          Length = 945

 Score = 1040 bits (538), Expect = 0.0
 Identities = 541/542 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccttggctcctgattgccaggatacctcgagcagcagagctgtaaactctttgg 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccttggctccagattgccaggatacctcgagcagcagagctgtaaactctttgg 263

                                                                       
Query: 64  ctggggaaaccatcccttgctgaagctgttacactgtgttgggggagtatctcctgcagc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctggggaaaccatcccttgctgaagctgttacactgtgttgggggagtatctcctgcagc 323

                                                                       
Query: 124 agctggagcagagcagtaacactcctgtagggaagccttgcccttcacagcctttacagt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agctggagcagagcagtaacactcctgtagggaagccttgcccttcacagcctttacagt 383

                                                                       
Query: 184 ttggctttgagacagatgaaaaaaggaaaaaggtcaagaaggctctttctgagatagatg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttggctttgagacagatgaaaaaaggaaaaaggtcaagaaggctctttctgagatagatg 443

                                                                       
Query: 244 acctgctgcgggattcaggctgcgccctgctcatgctgaagtcagggcacaattcctcca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acctgctgcgggattcaggctgcgccctgctcatgctgaagtcagggcacaattcctcca 503

                                                                       
Query: 304 cactgtgtgaaacagtgcctttcaggcggagctttgccctgggtgactctattcaccaag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cactgtgtgaaacagtgcctttcaggcggagctttgccctgggtgactctattcaccaag 563

                                                                       
Query: 364 cagcagttgactctgagtacaaacgcagaggaaagctgagttagaccacatccttgtgca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cagcagttgactctgagtacaaacgcagaggaaagctgagttagaccacatccttgtgca 623

                                                                       
Query: 424 tgcaggcaccatgagaccagcacaaactacaaggcacagactgatcagactgcagcaagt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgcaggcaccatgagaccagcacaaactacaaggcacagactgatcagactgcagcaagt 683

                                                                       
Query: 484 caaaaggtaccctgtcagagcttactatgtaggttgggaatgtggaggtaaagtcatatc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 caaaaggtaccctgtcagagcttactatgtaggttgggaatgtggaggtaaagtcatatc 743

             
Query: 544 ag 545
           ||
Sbjct: 744 ag 745


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no515_l24.g1 MSMg01no515_l24.g1 CHROMAT_FILE:
MSMg01no515_l24.g1 PHD_FILE: MSMg01no515_l24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:12 2005
         (158 letters)



>mm_chr14_48692502_48693059
          Length = 558

 Score =  296 bits (153), Expect = 5e-85
 Identities = 153/153 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatggaacttgcaagggaaggagagctctgtaaaccaccccagttggattcggtgtttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tcatggaacttgcaagggaaggagagctctgtaaaccaccccagttggattcggtgtttg 246

                                                                       
Query: 61  ttccatagtttatccttgggttttgtgctttgctttttgtttgcttgtttgtttgtgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ttccatagtttatccttgggttttgtgctttgctttttgtttgcttgtttgtttgtgtgt 186

                                            
Query: 121 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgag 153
           |||||||||||||||||||||||||||||||||
Sbjct: 185 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgag 153


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 158
Length of database: 558
Length adjustment: 8
Effective length of query: 150
Effective length of database: 550
Effective search space:    82500
Effective search space used:    82500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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