BAC Information

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BAC

Clone NameMSMg01-515O01
Chromosome14 (Build37)
Map Location 119,056,726 - 119,057,383
singlet/doubletsinglet
Overlap geneAbcc4
Upstream geneGpc6, 5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422
Downstream geneCldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2, Hs6st3, LOC619601, EG621324
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515O01.T7 (MSMg01no515_o01.b1)MSMg01-515O01.TJ (MSMg01no515_o01.g1)
ACCAG588009AG588010
length775786
length of high quality
(start - end)
402 (73 - 474)664 (75 - 738)
definitionCHROMAT_FILE: MSMg01no515_o01.b1 PHD_FILE: MSMg01no515_o01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:23 2005CHROMAT_FILE: MSMg01no515_o01.g1 PHD_FILE: MSMg01no515_o01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCATTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTT
TTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTC
TGTTCAGGAATTTTTCCCCTGTGTTTATATCTTCAAGGCTTTTCCCCACT
TTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGATCCTTGAT
CCACTTAGATTTGACCTTAACACAAGGAGATAAGTATGGATCGATTCGCA
TTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATG
CTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTG
ACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGT
CTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTTACACAATTGCT
CTGTAGTAAAGCTTTATGTCTGGTATGGTGATTCCGCCAGAAGTTCTTTT
ATCCTTTGAAATACTTTTTTGCTNATTCTCTTAGGATTTTCTTGTTTTTT
TCTCGGAAAATATTTGTAATATTGT
ATTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCATGAAAGTGCTAAGAGTCCAGGTC
CACACTGTCACCTACAGAATTTGGTTAGAACCACACAATCCTGTCTCCCA
GACTCCCCACCCCATTTATAAAGAAAAAAGAATTACATACACAGAAAAAA
AGAAGTTAAAAAAGTTTTAACTAAGTTTAAAATTTTGTGTTGGGGCTCAG
GCATAGTTATTCAGAGCTACGTGGGGTACGAGGCCCAGGTTTGGACACCG
CTGTGTGGGCCTCTGAGCCCCTGAAGGCAGCTATTTCTCAATGGCGCATT
TGGTCATCAGCCTGCATGCATCACTTGGCACTTGGGCAAACCGCTCTGCT
TTGCAGAGTAACTTACTACACAGGGCTTGATGGGACATTGTCCCCACAGG
GCCTGGGGCCTCTTTCATGTTCCTTTGGGACCTGAGATTCTTCCTGTCCA
ATTTCACAGTCCCTGATCTTTGTCATAAAAAAGGAAAACAAAGAAGCTGT
CAGAGAAAATCATGCTGTAGTGAAACCCAAACATAGAAAACAATGAACCT
GTGGGAGAAGGGAGTGGGCGGCAGACTTAGAAAGGAGGGAACAGGANACG
AAGCTTTAGTGGAGAAAGATCAGAGACAATGGGAGTACAGCGGGTCTGGC
GAAAGTGTCAGACCAAGATTTCCGAGATGCATGGTTGATTCGCCGTGAGA
CCACAAAGCAGGTGGACACGCATAAGCCACTAATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_o01.g1 MSMg01no515_o01.g1 CHROMAT_FILE:
MSMg01no515_o01.g1 PHD_FILE: MSMg01no515_o01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:23 2005
         (664 letters)



>mm_chr14_119056526_119057589
          Length = 1064

 Score = 1207 bits (624), Expect = 0.0
 Identities = 651/661 (98%), Gaps = 3/661 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatgaaagtgctaagagtccaggtccacactgtcacctacagaatttggttagaaccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatgaaagtgctaagagtccaggtccacactgtcacctacagaatttggttagaaccac 260

                                                                       
Query: 61  acaatcctgtctcccagactccccaccccatttataaagaaaaaagaattacatacacag 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaatcccgtctcccagactccccaccccatttataaagaaaaaagaattacatacacag 320

                                                                       
Query: 121 aaaaaaagaagttaaaaaagttttaactaagtttaaaattttgtgttggggctcaggcat 180
            |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 gaaaaaagaagttaaaaaagttttaactaagtttacaattttgtgttggggctcaggcat 380

                                                                       
Query: 181 agttattcagagctacgtggggtacgaggcccaggtttggacaccgctgtgtgggcctct 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttattcggagctacgtggggtacgaggcccaggtttggacaccgctgtgtgggcctct 440

                                                                       
Query: 241 gagcccctgaaggcagctatttctcaatggcgcatttggtcatcagcctgcatgcatcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagcccctgaaggcagctatttctcaatggcgcatttggtcatcagcctgcatgcatcac 500

                                                                       
Query: 301 ttggcacttgggcaaaccgctctgctttgcagagtaacttactacacagggcttgatggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttggcacttgggcaaaccgctctgctttgcagagtaacttactacacagggcttgatggg 560

                                                                       
Query: 361 acattgtccccacagggcctggggcctctttcatgttcctttgggacctgagattcttcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acattgtccccacagggcctggggcctctttcatgttcctttgggacctgagattcttcc 620

                                                                       
Query: 421 tgtccaatttcacagtccctgatctttgtcataaaaaaggaaaacaaagaagctgtcaga 480
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 621 tgtccaatttcacagtccctgatctttgtcataaaaa-ggaaaacaaagaagctgtcaga 679

                                                                       
Query: 481 gaaaatcatgctgtagtgaaacccaaacatagaaaacaatgaacctgtgggagaagggag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gaaaatcatgctgtagtgaaacccaaacatagaaaacaatgaacctgtgggagaagggag 739

                                                                       
Query: 541 tgggcggcagacttagaaaggagggaacagganacgaagctttagtggagaaagatcaga 600
           |||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 740 tgggcggcagactta--aaggagggaacaggaaacgaagctttagtggagaaagatcaga 797

                                                                       
Query: 601 gacaatgggagtacagcgggtctggcgaaagtgtcagaccaagatttccgagatgcatgg 660
           ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 798 gacaatgggagtacagcgggtctggggaaagtgtcagaccaagatctccgagatgcatgg 857

            
Query: 661 t 661
           |
Sbjct: 858 t 858


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)