BAC Information

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BAC

Clone NameMSMg01-516H19
Chromosome14 (Build37)
Map Location 97,394,085 - 97,594,932
singlet/doubletdoublet
Overlap genenone
Upstream geneKlhl1, LOC100043366, LOC668654
Downstream geneEG668659, Dach1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516H19.T7 (MSMg01no516_h19.b1)MSMg01-516H19.TJ (MSMg01no516_h19.g1)
ACCAG588470AG588471
length781765
length of high quality
(start - end)		579 (51 - 629)643 (81 - 723)
definitionCHROMAT_FILE: MSMg01no516_h19.b1 PHD_FILE: MSMg01no516_h19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:14 2005CHROMAT_FILE: MSMg01no516_h19.g1 PHD_FILE: MSMg01no516_h19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,594,358 - 97,594,932)(97,394,085 - 97,394,727)
sequence
NNNNAACTTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGACCTGGAATTCAAAGGGCAGAACAAGACCTATTAAGTA
ATTCAGTCCATTTTATAAAGCCAAAGGAAAAGGGTATGGAGACGCAATCA
CTCATTTTCTGAAAGCTGAGATGTAAGAATCAACTTAAGGATGGCTAGGA
TATTAGTAGCAAATAGAAAGATTCAGTGGCTGTCATGGGTTGAGAGCAAT
TGTCTGGCATCCGTGATGAACCTGGGTTACTAAACAAAGTTATGCTTGCT
TGCAGAATTCATAACAAATGCCATTGAAACTGAAACATCCAATGCAATTT
ATTTTTTGCATTAAGGTAATATAACACAGAGAACTCTGTGATACATTATT
TTTCTGTCATTAACTTTGGTCCATAAGTTGATTCAGGCTGACGATGAACT
CCATTATATCATCATTATTTTGTAACAGTAAAAGAGTGACAGGACAATGA
GAAGAGGAAATTTCCTCAAGTTAATGGATATCCGAGGCTTGGTTTTATTT
GTGCATATGAAAGCTTGCAATCTTGCAAATGTGGCTTCATTTTAAAAGTA
GTAAATCATCCAAGAAATACAATTTCCCATAGAGGTGAAGAATAATGTCC
AGCAATGCAGATCACAGGCTTCAGAAATTACTGCACAGCTTTAGGAAAAG
TTCAAATGGAGAAAAAATTTAAGTCATTTCTCTCCTCTGATATTCACGTG
GTAACTGTATTTCACTAAGTGCTATCCTGAC

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTCAGATGTAATATGAAC
AAAGTTTTTCTTATATGAAAAAATGCAGCATATAGGAAGATCAACAATGT
CAGAAAAATGCTACCATGTGAGCACACGCAGGTCCTTATATCCAAGTTGC
ATGAGAATTCTTCAAATCTACCCCCTTTGCATATTGCACTTTTTGGACAG
AAGCTCTAAAGCCATTTGGTGTTTATGGTGGGATTAAGATTCATTTTAAA
GATCTCTTCTGAAAACAGGGGGAGACTGTTTCAGACTATGAAGGTCTTCA
TTGGAATTGTGCTCTTAGTCTCATTTATTTTAACAAGATTTGTAATGCAT
TCTGGCCTTTGATCTCTTAGTTTGAAACCCTGCTTGTTGTTCCATTATTC
CGCCATCCATTTGCAGATAACAATGCATCAGACCCTTTCCCTCGCTGCAG
AAACAATGCCCTTTATTTAAGAAGGGACATGGCTTTGACAGATAAAGCAG
GCATTTGATAAATTGAAACAGGTTCTGAATTATTTTGTTGGGAATGTGCA
CTACATCTGTCTGCTGATTTCCTACTGAAGTCGGGCTTAAAGTTCTTGTC
TGCTGGTGATTTATTGAGCTAGAGAAAAGGTTAAGAAAATTTCATGGCTC
TACTCCTATCATTGGTAAGTGAATCAAATAGCATTTGTTAATGTTTATGA
TACTTAAAAGGCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_h19.b1 MSMg01no516_h19.b1 CHROMAT_FILE:
MSMg01no516_h19.b1 PHD_FILE: MSMg01no516_h19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:14 2005
         (579 letters)



>mm_chr14_97594154_97595132
          Length = 979

 Score = 1112 bits (575), Expect = 0.0
 Identities = 575/575 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagacctggaattcaaagggcagaacaagacctattaagtaattcagtccatttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 gaattcagacctggaattcaaagggcagaacaagacctattaagtaattcagtccatttt 720

                                                                       
Query: 65  ataaagccaaaggaaaagggtatggagacgcaatcactcattttctgaaagctgagatgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 ataaagccaaaggaaaagggtatggagacgcaatcactcattttctgaaagctgagatgt 660

                                                                       
Query: 125 aagaatcaacttaaggatggctaggatattagtagcaaatagaaagattcagtggctgtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 aagaatcaacttaaggatggctaggatattagtagcaaatagaaagattcagtggctgtc 600

                                                                       
Query: 185 atgggttgagagcaattgtctggcatccgtgatgaacctgggttactaaacaaagttatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 atgggttgagagcaattgtctggcatccgtgatgaacctgggttactaaacaaagttatg 540

                                                                       
Query: 245 cttgcttgcagaattcataacaaatgccattgaaactgaaacatccaatgcaatttattt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 cttgcttgcagaattcataacaaatgccattgaaactgaaacatccaatgcaatttattt 480

                                                                       
Query: 305 tttgcattaaggtaatataacacagagaactctgtgatacattatttttctgtcattaac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tttgcattaaggtaatataacacagagaactctgtgatacattatttttctgtcattaac 420

                                                                       
Query: 365 tttggtccataagttgattcaggctgacgatgaactccattatatcatcattattttgta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tttggtccataagttgattcaggctgacgatgaactccattatatcatcattattttgta 360

                                                                       
Query: 425 acagtaaaagagtgacaggacaatgagaagaggaaatttcctcaagttaatggatatccg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 acagtaaaagagtgacaggacaatgagaagaggaaatttcctcaagttaatggatatccg 300

                                                                       
Query: 485 aggcttggttttatttgtgcatatgaaagcttgcaatcttgcaaatgtggcttcatttta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 aggcttggttttatttgtgcatatgaaagcttgcaatcttgcaaatgtggcttcatttta 240

                                              
Query: 545 aaagtagtaaatcatccaagaaatacaatttccca 579
           |||||||||||||||||||||||||||||||||||
Sbjct: 239 aaagtagtaaatcatccaagaaatacaatttccca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no516_h19.g1 MSMg01no516_h19.g1 CHROMAT_FILE:
MSMg01no516_h19.g1 PHD_FILE: MSMg01no516_h19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:14 2005
         (643 letters)



>mm_chr14_97393885_97394927
          Length = 1043

 Score = 1243 bits (643), Expect = 0.0
 Identities = 643/643 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattcagatgtaatatgaacaaagtttttcttatatgaaaaaatgcagcatataggaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattcagatgtaatatgaacaaagtttttcttatatgaaaaaatgcagcatataggaaga 260

                                                                       
Query: 61  tcaacaatgtcagaaaaatgctaccatgtgagcacacgcaggtccttatatccaagttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaacaatgtcagaaaaatgctaccatgtgagcacacgcaggtccttatatccaagttgc 320

                                                                       
Query: 121 atgagaattcttcaaatctaccccctttgcatattgcactttttggacagaagctctaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgagaattcttcaaatctaccccctttgcatattgcactttttggacagaagctctaaa 380

                                                                       
Query: 181 gccatttggtgtttatggtgggattaagattcattttaaagatctcttctgaaaacaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccatttggtgtttatggtgggattaagattcattttaaagatctcttctgaaaacaggg 440

                                                                       
Query: 241 ggagactgtttcagactatgaaggtcttcattggaattgtgctcttagtctcatttattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagactgtttcagactatgaaggtcttcattggaattgtgctcttagtctcatttattt 500

                                                                       
Query: 301 taacaagatttgtaatgcattctggcctttgatctcttagtttgaaaccctgcttgttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taacaagatttgtaatgcattctggcctttgatctcttagtttgaaaccctgcttgttgt 560

                                                                       
Query: 361 tccattattccgccatccatttgcagataacaatgcatcagaccctttccctcgctgcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccattattccgccatccatttgcagataacaatgcatcagaccctttccctcgctgcag 620

                                                                       
Query: 421 aaacaatgccctttatttaagaagggacatggctttgacagataaagcaggcatttgata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaacaatgccctttatttaagaagggacatggctttgacagataaagcaggcatttgata 680

                                                                       
Query: 481 aattgaaacaggttctgaattattttgttgggaatgtgcactacatctgtctgctgattt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aattgaaacaggttctgaattattttgttgggaatgtgcactacatctgtctgctgattt 740

                                                                       
Query: 541 cctactgaagtcgggcttaaagttcttgtctgctggtgatttattgagctagagaaaagg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cctactgaagtcgggcttaaagttcttgtctgctggtgatttattgagctagagaaaagg 800

                                                      
Query: 601 ttaagaaaatttcatggctctactcctatcattggtaagtgaa 643
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttaagaaaatttcatggctctactcctatcattggtaagtgaa 843


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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