BAC Information

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BAC

Clone NameMSMg01-516M22
Chromosome14 (Build37)
Map Location 55,345,357 - 55,345,903
singlet/doubletsinglet
Overlap geneSlc7a8
Upstream geneLOC100043325, A730076H11Rik, LOC627777, A630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe
Downstream geneLOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516M22.T7 (MSMg01no516_m22.b1)MSMg01-516M22.TJ (MSMg01no516_m22.g1)
ACCAG588715AG588716
length773777
length of high quality
(start - end)		551 (53 - 603)401 (82 - 482)
definitionCHROMAT_FILE: MSMg01no516_m22.b1 PHD_FILE: MSMg01no516_m22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:40 2005CHROMAT_FILE: MSMg01no516_m22.g1 PHD_FILE: MSMg01no516_m22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNTTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTATGAGCAGGCAGAAGGAGACTCAGTTTGGGATAAAG
GCATAGTATTGTGGAGGAACAGGGCAGATAAAAGAATCCTGAAAACCACC
TATATATGGTGTAAGTTTTAGGAGTGAAGAAAGAAAACAATTGTCCCTGC
ACACATGGCCAAGAGCCATAGTGGCCCCATCCGCATCACAGGATTGAGGA
CTCTAGGGCAGACCCTCTTACCTTGATGGGGCGGGGAATGTCAGGCTTCT
TCCAGCGAAGGACTATCTGTCCTGCAACCGTTACCCCATAGAAGAGGTAG
TTGATGAAGCCCACATAGTTGATGAGTGTGTACATGTCACTGGTGACCAG
CATCAGCAGGGTGGAGAGGCACTGTTGAGATGAAGAAGAAGAAGGCATTG
GGAGATGTTCACTGGTTAGGGGCTATTCTTCCCCTCTAAGCCAGGTGTGC
TATTTTATAGTGAACATCTCAAGAGGGGGACTTTCTGCCACCTTCAGTAG
CCTAGGATGGATTATACCTTTACTGCCAGGAACTTCTTTCTGGCTTTTTG
GAGAAAGGTCTCTCTATGTAACTCTGGCTGTCCTGGAACCTGCTATATAA
ACCAGGCTGGGCTCAAACTCACAGAGAATCAGCTGCCTCTGCTTCCTCGG
AACTGGGATTAAAGACTGTGCTACACTCTGGCTAAAACTTGTTCTTATTA
CAGGATAAATGGGGGCCTGTACT

NTTTNTCCAATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAACACTTGGGGGGTGGG
GAAGCAGAAGCATCAGGAGTTCGAGGCCAGCCTCACTTATATAGGAAAGC
TGAGGCTAGCCTGGGCTACATGAGACCCTGTCTCAAAAAAAAAAAAAAAA
ACGGGGGGGGGGGCTGGGCCCAGAGACAGGTTGAGTTCAAGGTCAGCCTT
ATCTACATAGTGTGTTTCAGGACATAGTGAGCTACATAGCTACAGAGTAA
GATCCTATGGCTTCTGACCTCCAAATGCTAGGATTAAAGGCTCTCTCAAT
TTTTAATGAGGCCCCTAGAAAAATGTAAAACTCTTTTTGTGACTTGCATT
ATATTTCACTGGTCAGTGATGACATATGACTTGAAGCCTTATGCTATTTT
GAAAGACTTACTACTTTTCTATGTATGTATATGTGGGTTTGTGTGAATTT
ATGTGTAGCACTGACATGGAGGCGCCCACAGAAGCCAAAGGGTATCAGAT
TCCAGGGAACTGGAGTACAGGTAGCTGTGAGCTGTTCTATGGGTGCTGAG
ATGTGAACCAGGTCCTCTGTAAGAGCAGTAAGCACTCATAATGCTGAGCT
ATCTGTCCAGCCTTTCGAGTCTCTTTTAGAAAGATCCTGGTATCTTCTGA
TGTGGTCCATCCTAGCTTGCAGTAACTTCCTAGCTCAAACCTTGTACAGA
AGTGAAGTAGTATTTAAATGTGAAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_m22.b1 MSMg01no516_m22.b1 CHROMAT_FILE:
MSMg01no516_m22.b1 PHD_FILE: MSMg01no516_m22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:40 2005
         (551 letters)



>mm_chr14_55345153_55346103
          Length = 951

 Score = 1058 bits (547), Expect = 0.0
 Identities = 547/547 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctatgagcaggcagaaggagactcagtttgggataaaggcatagtattgtggag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctatgagcaggcagaaggagactcagtttgggataaaggcatagtattgtggag 264

                                                                       
Query: 65  gaacagggcagataaaagaatcctgaaaaccacctatatatggtgtaagttttaggagtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaacagggcagataaaagaatcctgaaaaccacctatatatggtgtaagttttaggagtg 324

                                                                       
Query: 125 aagaaagaaaacaattgtccctgcacacatggccaagagccatagtggccccatccgcat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagaaagaaaacaattgtccctgcacacatggccaagagccatagtggccccatccgcat 384

                                                                       
Query: 185 cacaggattgaggactctagggcagaccctcttaccttgatggggcggggaatgtcaggc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cacaggattgaggactctagggcagaccctcttaccttgatggggcggggaatgtcaggc 444

                                                                       
Query: 245 ttcttccagcgaaggactatctgtcctgcaaccgttaccccatagaagaggtagttgatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttcttccagcgaaggactatctgtcctgcaaccgttaccccatagaagaggtagttgatg 504

                                                                       
Query: 305 aagcccacatagttgatgagtgtgtacatgtcactggtgaccagcatcagcagggtggag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aagcccacatagttgatgagtgtgtacatgtcactggtgaccagcatcagcagggtggag 564

                                                                       
Query: 365 aggcactgttgagatgaagaagaagaaggcattgggagatgttcactggttaggggctat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aggcactgttgagatgaagaagaagaaggcattgggagatgttcactggttaggggctat 624

                                                                       
Query: 425 tcttcccctctaagccaggtgtgctattttatagtgaacatctcaagagggggactttct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcttcccctctaagccaggtgtgctattttatagtgaacatctcaagagggggactttct 684

                                                                       
Query: 485 gccaccttcagtagcctaggatggattatacctttactgccaggaacttctttctggctt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gccaccttcagtagcctaggatggattatacctttactgccaggaacttctttctggctt 744

                  
Query: 545 tttggag 551
           |||||||
Sbjct: 745 tttggag 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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