BAC Information

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BAC

Clone NameMSMg01-517F07
Chromosome14 (Build37)
Map Location 10,049,515 - 10,050,019
singlet/doubletsinglet
Overlap geneLOC100041948
Upstream geneKctd6, Acox2, BC055107, Oit1, LOC667005, 4930452B06Rik
Downstream geneFhit, LOC100042415
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517F07.T7 (MSMg01no517_f07.b1)MSMg01-517F07.TJ (MSMg01no517_f07.g1)
ACCAG589108AG589109
length770776
length of high quality
(start - end)
519 (58 - 576)505 (69 - 573)
definitionCHROMAT_FILE: MSMg01no517_f07.b1 PHD_FILE: MSMg01no517_f07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:22 2005CHROMAT_FILE: MSMg01no517_f07.g1 PHD_FILE: MSMg01no517_f07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
AGCTCAGGGTCAGCTTCAAGGATTTTCTGGGAACCATTAGAACACTGGTG
GAGGCTTAGCTATATGTCAAAATCAATACTTAAAGGCACTTATAATAAAA
CAATACTGAAAGAGAACACACAGATCCATGCACCAGACTAATGCGGGGAC
AGAGTTTGAGTATACGGGCTATTGGAATGCCAAGGTTCCAGGAGGCTGTT
TTTGTGAAACTCTTTGCCTCCTGACTGCTTCCAGGCTTTTAGGCCTACCA
AGAAGACTTTACTGGAGTGAACGTAGCAGATCCCCAGGTGATGAAGTCTC
TGGATGGCCTTTCCTTCACTCTCTGCTCCACAATTTGTCTCTGCATTTTT
TTCCATGAGTATTTTTTCCCTCTTCTAAGAAGGATCGAAGCATCCACACT
TTGGTATTCTTTCTTCTTTTTGAGCTTCATGTGATCTATGAATTGTATTT
AGGAATTTTGAGATTTGGGCTAATATCTACTCATCAGTGAATGCATACCA
TGTGAGTTCTTTTGTGACTGGGTTACCTCACTCAGGATGATATTTTCTAG
TTCCATCCATTGGCTAACAATTTTATGAAGTAATTGTCTTAAGAGCTGAC
TAGTACTGAATTGTGTAAATGGATCACATTTTCTGTATTCATTCTTCTGT
TGAGGGACATCTAGGTTCTTTACAGCTTCTAGTTATTATATATAAAGCTG
CTATGAACACAGTGGAGCAT
AATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAACAGTAATAATGAGACTCAATCCCATAGGAA
TGCACTAGTATTCTAAGAAGATATCTATGAATAAATTATATAAACTGTGA
GTCAAGAGATTTAAAAGAACAGAATCATGAAACCCTGTGTGTTAGGTGTG
GACCATGTCTATCAACTCATAAAATACACTTATTTAACTGATGGCTTTTG
CTAGGCATCTAGTGGAGAAAGGAATGAATCCCACTTACTGATCTCACTCT
CATGGAATTTAGAGTCTTCTGGGGGATATGATAGAAAACAGCAAACAAAT
ATACCAAAAGAACACAGACAGGGAAGACACACTGAAGAGAGATGTGGAAA
GATAGCCTTTTTATGTGCTCTACAATGCAAATAAGTCTACAATGTAGAAC
TCTACAATGCTCTACAACAACCAAAGGCTGTACTCTTCAGCATAGAACTC
TATGAGTTTGAGGTATCCTGATATCACCACCCACTGTGCTGAAGTGGTTA
AATGATCAGCTTCTTGCATATCAGAACAACCTCATCAAGTGCATAGAGCA
NGATTGTCTGAAGAGGCAACACAAGACAGCAGAGAAGCAGCTACACTGTG
GATTGGGCTGAATCTGAATTCTAGCTCCACCACTTATTAATTGGCTATCT
TTGGGTCANGNACCTGCTCTCCTTGGCTCTCTGTTTTCTCACATGACTTA
AGGNAGAGCTGTTCTTACTTCTAGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_f07.g1 MSMg01no517_f07.g1 CHROMAT_FILE:
MSMg01no517_f07.g1 PHD_FILE: MSMg01no517_f07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:22 2005
         (505 letters)



>mm_chr14_10049315_10050219
          Length = 905

 Score =  938 bits (485), Expect = 0.0
 Identities = 500/505 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacagtaataatgagactcaatcccataggaatgcactagtattctaagaagatatctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 aacagtaataatgagactcaatcccataggaatgcactagtattctaagaagatatctat 646

                                                                       
Query: 61  gaataaattatataaactgtgagtcaagagatttaaaagaacagaatcatgaaaccctgt 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 645 gaataaattatataaactgtgagtcaagatatttaaaagaacagaatcatgaaaccctgt 586

                                                                       
Query: 121 gtgttaggtgtggaccatgtctatcaactcataaaatacacttatttaactgatggcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 gtgttaggtgtggaccatgtctatcaactcataaaatacacttatttaactgatggcttt 526

                                                                       
Query: 181 tgctaggcatctagtggagaaaggaatgaatcccacttactgatctcactctcatggaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tgctaggcatctagtggagaaaggaatgaatcccacttactgatctcactctcatggaat 466

                                                                       
Query: 241 ttagagtcttctgggggatatgatagaaaacagcaaacaaatataccaaaagaacacaga 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ttagagtcttctggggggtatgatagaaaacagcaaacaaatataccaaaagaacacaga 406

                                                                       
Query: 301 cagggaagacacactgaagagagatgtggaaagatagcctttttatgtgctctacaatgc 360
           ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 405 cagggaagacacactgaagagagatgtggaaagatagccttttcatgtactctacaatgc 346

                                                                       
Query: 361 aaataagtctacaatgtagaactctacaatgctctacaacaaccaaaggctgtactcttc 420
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aaataagtctacaatgtagatctctacaatgctctacaacaaccaaaggctgtactcttc 286

                                                                       
Query: 421 agcatagaactctatgagtttgaggtatcctgatatcaccacccactgtgctgaagtggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 agcatagaactctatgagtttgaggtatcctgatatcaccacccactgtgctgaagtggt 226

                                    
Query: 481 taaatgatcagcttcttgcatatca 505
           |||||||||||||||||||||||||
Sbjct: 225 taaatgatcagcttcttgcatatca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)