Query= MSMg01no517_l14.b1 MSMg01no517_l14.b1 CHROMAT_FILE:
MSMg01no517_l14.b1 PHD_FILE: MSMg01no517_l14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:54 2005
(713 letters)
>mm_chr14_90118717_90119830
Length = 1114
Score = 1365 bits (706), Expect = 0.0
Identities = 709/710 (99%), Gaps = 1/710 (0%)
Strand = Plus / Minus
Query: 5 gaattc-tacatgtacctactcagctagagccaaaggataatgtttctttgtatttatct 63
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 gaattcatacatgtacctactcagctagagccaaaggataatgtttctttgtatttatct 855
Query: 64 accatctatggatttttttttcactatcttttggtttgagtcttgggaagcagagaactt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 accatctatggatttttttttcactatcttttggtttgagtcttgggaagcagagaactt 795
Query: 124 ggtggtaggaatatgtgttctctttcaaaatgaaaattatgcaatttaattttctgacca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 ggtggtaggaatatgtgttctctttcaaaatgaaaattatgcaatttaattttctgacca 735
Query: 184 gttgttatgtactgtgtcaatcataattgatgttaaataaaagatactcaaataaggatt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gttgttatgtactgtgtcaatcataattgatgttaaataaaagatactcaaataaggatt 675
Query: 244 gggagacccattgctttgaaagttaggcaagaaaagtggggtgaggcagaggtataattt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gggagacccattgctttgaaagttaggcaagaaaagtggggtgaggcagaggtataattt 615
Query: 304 ggacatggattctcagatgagaggcagtaatgcatgacatttttcttatatatctggtga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ggacatggattctcagatgagaggcagtaatgcatgacatttttcttatatatctggtga 555
Query: 364 ccctcccttgagaaaggtagtcctcaggtagtggatgtgtttttatttaaattctagtgt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ccctcccttgagaaaggtagtcctcaggtagtggatgtgtttttatttaaattctagtgt 495
Query: 424 ctgcctagagatgagcctaactgttttcagctgcgaagaatggaggtgttttataagggg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ctgcctagagatgagcctaactgttttcagctgcgaagaatggaggtgttttataagggg 435
Query: 484 ttaaatgtctaccaagctaaggacaaagaaagaacttgcagttcttgagagttagaatca 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ttaaatgtctaccaagctaaggacaaagaaagaacttgcagttcttgagagttagaatca 375
Query: 544 tgctaatgcaaaagtattatgccaggaatagaaacccaagggtacaagctgaaaacaagg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tgctaatgcaaaagtattatgccaggaatagaaacccaagggtacaagctgaaaacaagg 315
Query: 604 aagtctagttaaacaacagtatctaagtctttttactctcaaattctgtacccagtgaca 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aagtctagttaaacaacagtatctaagtctttttactctcaaattctgtacccagtgaca 255
Query: 664 caagcctactatgaaattccctccatcaaaatctacccaaatactgccat 713
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 caagcctactatgaaattccctccatcaaaatctacccaaatactgccat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 713
Length of database: 1114
Length adjustment: 10
Effective length of query: 703
Effective length of database: 1104
Effective search space: 776112
Effective search space used: 776112
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no517_l14.g1 MSMg01no517_l14.g1 CHROMAT_FILE:
MSMg01no517_l14.g1 PHD_FILE: MSMg01no517_l14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:54 2005
(651 letters)
>mm_chr14_89966477_89967527
Length = 1051
Score = 1253 bits (648), Expect = 0.0
Identities = 650/651 (99%)
Strand = Plus / Plus
Query: 1 ctgccatataatagaattgtaagcacactaccttctaagaaagccctgagggggaaaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgccatataatagaattgtaagcacactaccttctaagaaagccctgagggggaaaggg 260
Query: 61 agaagtgttgatggaggacagaattttattaaggctgttaactaatctaagacagctctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaagtgttgatggaggacagaattttattaaggctgttaactaatctaagacagctctt 320
Query: 121 tgttcacatttgatgtagtgaggtagacaagtattaactccaagtacacaaatgaagaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttcacatttgatgtagtgaggtagacaagtattaactccaagtacacaaatgaagaga 380
Query: 181 cattttagactttgtgtgtgtgttttcacagcttttacatcgatttctgcataacatgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattttagactttgtgtgtgtgttttcacagcttttacatcgatttctgcataacatgtt 440
Query: 241 ttaagaataaggactcagactcttctgaaatatgtcactgggtggtggtaactccacatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaagaataaggactcagactcttctgaaatatgtcactgggtggtggtaactccacatt 500
Query: 301 tgtcatatggaactactgttggtagttaccagggaaacaattttttctatacaagaattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtcatatggaactactgttggtagttaccagggaaacaattttttctatacaagaattt 560
Query: 361 ccgacttatgaaagtttactgaggaaaattaaaaccaattttatacttctgtctctcaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccgacttatgaaagtttactgaggaaaattaaaaccaattttatacttctgtctctcaca 620
Query: 421 cttacttctaaatgcaacatataataattacatatatattatatttgtctttagtattca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttacttctaaatgcaacatataataattacatatatattatatttgtctttagtattca 680
Query: 481 tttttatgaaatacatagattaagacagcaaactgttcagttattacatcacctgttgtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttttatgaaatacatagattaagacagcaaactgttcagttattacatcacctgttgtg 740
Query: 541 ttcatgaaaattctggagggcaaaaaatggtgtattttttctaagtgataaaattacagn 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttcatgaaaattctggagggcaaaaaatggtgtattttttctaagtgataaaattacagt 800
Query: 601 ttctttcttctttttctctctgagcaattaaatggtttacaaatctcacag 651
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttctttcttctttttctctctgagcaattaaatggtttacaaatctcacag 851
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space: 667281
Effective search space used: 667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
