Query= MSMg01no517_n15.b1 MSMg01no517_n15.b1 CHROMAT_FILE:
MSMg01no517_n15.b1 PHD_FILE: MSMg01no517_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:04 2005
(627 letters)
>mm_chr14_91914007_91915033
Length = 1027
Score = 1033 bits (534), Expect = 0.0
Identities = 537/538 (99%)
Strand = Plus / Plus
Query: 90 agcattttcaacaaatggtcttggatcatctggcagtcagcatgtagaagaatgcaaatt 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 agcattttcaacaaatggtcttggatcatctggcagtcagcatgtagaagaatgcaaatt 349
Query: 150 gatccattcttatcttctgtacaacgctcaagtccaaatggatcaagatcctccactcca 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gatccattcttatcttctgtacaacgctcaagtccaaatggatcaagatcctccactcca 409
Query: 210 gataggcttaggattgtcccttgtaatcacaaaggcatcctcatatgagtagagatgact 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gataggcttaggattgtcccttgtaatcacaaaggcatcctcatatgagtagagatgact 469
Query: 270 gaactcaatatggcaagcaataaaggagtagaagctagacactggggaaataaattagag 329
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 470 gaactcaatatggcaagcaataaaggagtagaagctagacactggggaaatagattagag 529
Query: 330 agaaaatccagtgtgattggagggtttagtaggggaatatgattaaaatctcttggacac 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 agaaaatccagtgtgattggagggtttagtaggggaatatgattaaaatctcttggacac 589
Query: 390 ataggaaattaacaagaatacagatatgagaaatttttatttgacccaaaccaatcagta 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ataggaaattaacaagaatacagatatgagaaatttttatttgacccaaaccaatcagta 649
Query: 450 aacatagaaggttgatgaatccagtaattcctaaaacttcggagtttttgttttaagaga 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 aacatagaaggttgatgaatccagtaattcctaaaacttcggagtttttgttttaagaga 709
Query: 510 atttcattcactcatatctgacttatatcctccattaatagattattgaataaaccttat 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 atttcattcactcatatctgacttatatcctccattaatagattattgaataaaccttat 769
Query: 570 attgtacatataattttgactagtgctataaacactatgtttcaatgaaaaatttgag 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 attgtacatataattttgactagtgctataaacactatgtttcaatgaaaaatttgag 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_n15.g1 MSMg01no517_n15.g1 CHROMAT_FILE:
MSMg01no517_n15.g1 PHD_FILE: MSMg01no517_n15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:05 2005
(684 letters)
>mm_chr14_91954813_91955897
Length = 1085
Score = 632 bits (327), Expect = 0.0
Identities = 400/425 (94%), Gaps = 9/425 (2%)
Strand = Plus / Minus
Query: 263 cctcttttccctgtctgttcccataaaagttggcatttcctatctttctgtcaaatcttt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1085 cctcttttccctgtctgttcccataaaagttggcatttcctatctttctgtcaaatcttt 1026
Query: 323 ctcca-tcatatcattttgtctgcccctcaatt--aaaaatcacagtttgggataaatgg 379
||||| | ||||||||||||||||| || |||| |||||||||||||||||||||||||
Sbjct: 1025 ctccagt-atatcattttgtctgccactgaattaaaaaaatcacagtttgggataaatgg 967
Query: 380 agtatac-aaagagcatgtctgaattttacctggatgtgatatcttgccagtgtagccat 438
||| ||| ||| | |||||||| ||||||||||||||||||| |||| ||||||||||||
Sbjct: 966 agtgtactaaa-aacatgtctggattttacctggatgtgataccttgacagtgtagccat 908
Query: 439 gttgctgtattaaaatatcttcacagtgcttaataaagtaagtttgaatcataagaaact 498
||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 907 gttgctgtactaatatatctttacagtgcttaataaagtaagtttgaatcataagaaact 848
Query: 499 gatgggcatataaacataaaataaa-aa-cattgtagtaattctttaagttccatctgat 556
|||| |||||||||||||||| ||| || |||||||||||||||||||||||||| |||
Sbjct: 847 gatgagcatataaacataaaa-aaagaaccattgtagtaattctttaagttccatatgac 789
Query: 557 tggagaatcctcttattcaattttggaattacaggtatgtaaatatattcttccttggca 616
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 788 tggagaatcctcttattcaattttggaattacagctatgtaaatatattcttccttggca 729
Query: 617 ctaattatttggagaataagtgtgaataatcttatatggcacttttgtagaaatttttct 676
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 728 ctaattgtttggagaataagtgtgaataatcttatatggcacttttgtagtaatttttct 669
Query: 677 ttttt 681
|||||
Sbjct: 668 ttttt 664
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1085
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1075
Effective search space: 724550
Effective search space used: 724550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
