Query= MSMg01no518_a16.b1 MSMg01no518_a16.b1 CHROMAT_FILE:
MSMg01no518_a16.b1 PHD_FILE: MSMg01no518_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:20 2005
(689 letters)
>mm_chr14_13315539_13316627
Length = 1089
Score = 1212 bits (627), Expect = 0.0
Identities = 663/685 (96%), Gaps = 16/685 (2%)
Strand = Plus / Plus
Query: 5 gaattctttgataggatcacagattttctttgatagacttttgaaatcttttgaatttct 64
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgataggatcacagattttctttaatagacttttgaaatcttttgaatttct 264
Query: 65 atttttcttttgataccgtaactaagctgaacatttaatttctaatatggtcacaagata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atttttcttttgataccgtaactaagctgaacatttaatttctaatatggtcacaagata 324
Query: 125 gaaagcatgaagtcagctaggaagccatggtcagagtcttgtagactctcccagaatgct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaaagcatgaagtcagctaggaagccatggtcagagtcttgtagactctcccagaatgct 384
Query: 185 ttgagcaaacacaccaggagatctctgtaatctacttctagcatcttatttaccgcattc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgagcaaacacaccaggagatctctgtaatctacttctagcatcttatttaccgcattc 444
Query: 245 caatttgcactcttaaccctgacaactccttgccaccacctgccacctgcctgtctgtaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caatttgcactcttaaccctgacaactccttgccaccacctgccacctgcctgtctgtaa 504
Query: 305 tatcatctgtctgtctatctatctatctatctatctatctatctatctatctatctatct 364
|||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 505 tatcatctgtct----------------atctatctatctatctatctatctatctatct 548
Query: 365 atctatctatctatctatctatctatcttattccctaggaaaattgaaaagttagggtaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 549 atctatctatctatctatctatctatcttattccctaggaaaattgaaaaggtagggtaa 608
Query: 425 tcataacagaaataagaatatttaaaggccagggaagaagacagtgagacctgctttgct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 609 tcataacagaaataagaatatttaaaggccagggaagaagacagtgagacctgctttcct 668
Query: 485 tagaagagggctcaagtatcccaaaattcatattcatcttcgctttcatattatatttaa 544
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 669 tagaagagggctcaagtatcccaagattcatattcatcttcgctttcatattatatttaa 728
Query: 545 agttcagttttactctattcctggacttcagactttctttacaactctaatatggttatt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 agttcagttttactctattcctggacttcagactttctttacaactctaatatggttatt 788
Query: 605 ctggagagaatctttaattttgcttaaggaaccttctatggctgtcacgtgcagagataa 664
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 789 ctggagagaatctttaattttgcttaaggaaccttcaatggctgtcacctgcagagataa 848
Query: 665 tatgtgttggaattatcctttgaaa 689
|||||||||||||||||||||||||
Sbjct: 849 tatgtgttggaattatcctttgaaa 873
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 81
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space: 732641
Effective search space used: 732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_a16.g1 MSMg01no518_a16.g1 CHROMAT_FILE:
MSMg01no518_a16.g1 PHD_FILE: MSMg01no518_a16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:20 2005
(653 letters)
>mm_chr14_13477715_13478767
Length = 1053
Score = 1180 bits (610), Expect = 0.0
Identities = 643/654 (98%), Gaps = 2/654 (0%)
Strand = Plus / Minus
Query: 1 ccactgccctctttgaagtctttctcatcctcccatttaagaaaagccacatagagaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 853 ccactgccctctttgaagtctttctcatcctcccatttaagaaaagccacacagagaagc 794
Query: 61 tttcccagttattaaaagggcatgtatcctgggaaagatggctcaagaggttactagcac 120
||| |||||| ||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 793 ttttgcagttagtaacagggcatgtatcct-ggaaagatggctcaagaggttactagcac 735
Query: 121 attgatgtgaattgatcggacagttagaaacaaaaccattctataatgtcaagaacatgt 180
|| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 734 atcgatgtgaactgatcggacagatagaaacaaaaccattctataatgtcaagaacatgt 675
Query: 181 gaatccaaagagttgtacaaacatgttatccaaacatgagctatgtttttatgcccttca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 674 gaatccaaagagttgtacaaacatgttatccaaacatgagctatgtttttatgccctaca 615
Query: 241 acttctcctctcatgaatgaaggagtgctaacagactacattttataaaacaatgatcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 acttctcctctcatgaatgaaggagtgctaacagactacattttataaaacaatgatcct 555
Query: 301 gttatcacttggcgattcgtgggcattggtatttgaatggaggtcttggctaacacccaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gttatcacttggcgattcgtgggcattggtatttgaatggaggtcttggctaacacccaa 495
Query: 361 tctagatttctggtctgcttctccttcatcatcataggagcagttggaggtcattacctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tctagatttctggtctgcttctccttcatcatcataggagcagttggaggtcattacctc 435
Query: 421 aagatgacattctatttttgcattatgtttgcattatgattttaaagtttattgcataaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aagatgacattctatttttgcattatgtttgcattatgattttaaagtttattgcataaa 375
Query: 481 aactcttagatgcatatttcctattatagggtgaatatttataagccatctaaggtaata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aactcttagatgcatatttcctattatagggtgaatatttataagccatctaaggtaata 315
Query: 541 acagaaaacagagtggtgggatatggaaattca-tttttttttcagctcaggcacagcct 599
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 314 acagaaaacagagtggtgggatatggaaattcattttttttttcagctcaggcacagcct 255
Query: 600 gggaaaaattaattgcattgttttgcctagaggaaatgctttattgcttgggga 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gggaaaaattaattgcattgttttgcctagaggaaatgctttattgcttgggga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
