BAC Information

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BAC

Clone NameMSMg01-518E01
Chromosome14 (Build37)
Map Location 123,125,604 - 123,126,206
singlet/doubletsinglet
Overlap genePcca
Upstream geneLOC668843, Phgdhl1, Gpr18, Ebi2, Timm8a2, Tm9sf2, LOC621710, Clybl, 1700108J01Rik, EG328479, EG432907, Zic5, Zic2, ENSMUSG00000075465, LOC668847
Downstream geneBC006662, 4930594M22Rik, Tmtc4, Vgcnl1, Itgbl1, LOC668700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518E01.T7 (MSMg01no518_e01.b1)MSMg01-518E01.TJ (MSMg01no518_e01.g1)
ACCAG589805AG589806
length744755
length of high quality
(start - end)
242 (50 - 291)598 (79 - 676)
definitionCHROMAT_FILE: MSMg01no518_e01.b1 PHD_FILE: MSMg01no518_e01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:36 2005CHROMAT_FILE: MSMg01no518_e01.g1 PHD_FILE: MSMg01no518_e01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTATGGAAAGTGAAGAAAAACAGGCTTAATTTTTAGTTTG
GTGCTTTTAGTTTAGGTTTTTTTTTTTTTTCTTCTTCTTCATTTTTTCCT
TTTATTGAAAAAATGTTTTTTCTCTTACAATATATCTTGATTACAGTTTC
TCCTCCCAACTCTCCTTCCTCTCTGGATCTACTCCCTTTCTGTCTCTCAT
TCGGAAAACAAAAACAAACAAACAGACAGACAGACAGACAGACAGACAGA
CAGAAAACCAGGCTTCTATGAGATAGCAGCCAAACATAACAAAATAAAAA
TAATAATATGAAGCAAAAGTCATCAATCACACTGAGGCTGGACAAGGCAA
CCCAACAGAAGGAAAAGAGCCCCAAGAGCAGACTCAAGAGTCAGATACCC
ACTCATTCACACACTCAGGAGTCCCATAAAAATACTAAACTGAAAGCTGT
AATTTATACTCAGGCCCTGTGCAGATCCATGTAGGCCCTGTGCTTGCTGC
TTCAGTCTCTGTGAGTTCATATGAGTCCTGCTTAGTTGACTCAAAGGGCC
CTGTTCTCCTGGGGTCCTCCATCCCCTCTGGTTCTTAACACTCTTTCTGC
CCCTCTTCTCTGGTCCCTGAGCTCTGAGGGTAGAAATTGATGACATCTTC
TTTATACTCTCTCTCCCTAAAACGCCTGACTGTGGGTCTCTGCT
CCTGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGACACTGAAGCACATAAGGG
TGTCACATAACTTATGTACCTTAAATATAGGAGCATTTTCTTCTCATGTG
TGTATATGTGTGTTTGCATGTGTCTGGGCATACATAAGTGGATGTCATTG
TGGAGACCTGAAGCACACGTCTTCATGGTTCCTTCACCTTCTTTTCTGAG
GCAGGGCCTCTCAGTCAAACCCAGATTTCTCTGATACAGCTAGTCTTCCT
AGCCAGGTTGCTATGGAGATCCTTTCTATTCCTGAGCCCTGGGATCACAG
GTGGGCCTGCCTCTATGCCCACTTGGCTAGCGTTAGTTCTGGAGCTCCAA
GCTTCAATCCTTTTGCTCACACAGCAGGCACTTTGACCACTGAGCTGTCC
AGGCCTAGGATTTGGGGTTTTGTTATGTTTTGTTTTGTTTTAAATGTAGA
TTTTATTTCAGCAAATATGTTTTAAAAAGTTGAAGACAGTTTAGTGTTAT
AAAGAAAGGTAACACACACGTGTTAGGTGTCACAAAAGGAAAGGGGTGAA
GAAGGCAAGAAATGTTAGAGAAATACTTTGGGCATTGTCTTCATAAGACT
GAAATTAAGTGGCTGGAGAGGTGGCTCAGCAGTTAAGAGCACTTGATGGT
CTTCTTGAGGACCTAAGTTTCATTCTCAGCACCACATCTGGCAGCCTGGA
GCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_e01.g1 MSMg01no518_e01.g1 CHROMAT_FILE:
MSMg01no518_e01.g1 PHD_FILE: MSMg01no518_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:36 2005
         (598 letters)



>mm_chr14_123125409_123126406
          Length = 998

 Score = 1096 bits (567), Expect = 0.0
 Identities = 592/603 (98%), Gaps = 5/603 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagacactgaagcacataagggtgtcacataacttatgtaccttaaatataggagcattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 cagacactgaagcacataagggtgtcacataacttatgtaccttaaatataggagcattt 255

                                                                       
Query: 61  tcttctcatgtgtgtatatgtgtgtttgcatgtgtctgggcatacataagtggatgtcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tcttctcatgtgtgtatatgtgtgtttgcatgtgtctgggcatacataagtggatgtcat 315

                                                                       
Query: 121 tgtggagacctgaagcacacgtcttcatggttccttcaccttcttttctgaggcagggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tgtggagacctgaagcacacgtcttcatggttccttcaccttcttttctgaggcagggcc 375

                                                                       
Query: 181 tctcagtcaaacccagatttctctgatacagctagtcttcctagccaggttgctatggag 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 376 tctcagtcaaacccagatttctctgatatagctagtcttcctagccaggttgctatggag 435

                                                                       
Query: 241 atcctttctattcctgagccctgggatcacaggtgggcctgcctctatgcccacttggct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 atcctttctattcctgagccctgggatcacaggtgggcctgcctctatgcccacttggct 495

                                                                       
Query: 301 agcgttagttctggagctccaagcttcaatccttttgctcacacagcaggcactttgacc 360
           || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 agtgttaattctggagctccaagcttcaatccttttgctcacacagcaggcactttgacc 555

                                                                       
Query: 361 actgagctgtccaggcctaggatttggggttttgttatgttttgttttgtttt-----aa 415
           ||||||||||||||||| ||||||| |||||||||||||||||||||||||||     ||
Sbjct: 556 actgagctgtccaggcccaggattttgggttttgttatgttttgttttgttttgttttaa 615

                                                                       
Query: 416 atgtagattttatttcagcaaatatgttttaaaaagttgaagacagtttagtgttataaa 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 atgtagattttatttcagcaaatatgttttaaaaagttgaagacagtttagtgttataaa 675

                                                                       
Query: 476 gaaaggtaacacacacgtgttaggtgtcacaaaaggaaaggggtgaagaaggcaagaaat 535
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 676 gaaaggtaacacacacgtgttaggtgtctcaaaaggaaaggggtgaagaaggcaagaaat 735

                                                                       
Query: 536 gttagagaaatactttgggcattgtcttcataagactgaaattaagtggctggagaggtg 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 gttagagaaatactttgggcattgtcttcataagactgaaattaagtggctggagaggtg 795

              
Query: 596 gct 598
           |||
Sbjct: 796 gct 798


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)