Query= MSMg01no520_f09.b1 MSMg01no520_f09.b1 CHROMAT_FILE:
MSMg01no520_f09.b1 PHD_FILE: MSMg01no520_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:21 2005
(594 letters)
>mm_chr14_100036705_100037698
Length = 994
Score = 1114 bits (576), Expect = 0.0
Identities = 588/592 (99%), Gaps = 2/592 (0%)
Strand = Plus / Minus
Query: 5 gaattcaaggaattttc-catggaatgtgggtcaattttcctaattgtgatgagctccag 63
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 gaattcaaggaatttacaaatggaatgtgggtcaattttcctaattgtgatgagctccag 778
Query: 64 aactagattctagaggtggctttttttttttaattctgtatttcttctattgtgatagtg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 aactagattctagaggtggctttttttttttaattctgtatttcttctattgtgatagtg 718
Query: 124 atgccttgaattctgctggttagcttccatgcagctcactcattggttggagttagatat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 atgccttgaattctgctggttagcttccatgcagctcactcattggttggagttagatat 658
Query: 184 tttgtatggcttgagaaaagg-acacacaaacacacacacacacacacacacacacacac 242
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tttgtatggcttgagaaaaggcacacacaaacacacacacacacacacacacacacacac 598
Query: 243 acacacacttacaccagatagtataaaagcaccagtttcctgtttccaaaataggactaa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 acacacacttacaccagatagtataaaagcaccagtttcctgtttccaaaataggactaa 538
Query: 303 atgacttaatttgagattgtactgaaaatacaagagcctcaactgccccctaacttggat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 atgacttaatttgagattgtactgaaaatacaagagcctcaactgccccctaacttggat 478
Query: 363 gttgcaactcactgacacctagaggtggtatccatctttctggcatcacaatatgattct 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gttgcaactcactgacacctagaggtggtatccatctttctggcatcacaatatgattct 418
Query: 423 acctataaagtccacacttgggaaacaaaaaaatccaaacaaaaactatgacagcatttt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 acctataaagtccacacttgggaaacaaaaaaatccaaacaaaaactatgacagcatttt 358
Query: 483 gtttgtttttctcttaacattttgggtgagtttacagttttttgttgggctacattcata 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gtttgtttttctcttaacattttgggtgagtttacagttttttgttgggctacattcata 298
Query: 543 gctattttggacactatgtggaccacaggatggtcacccttggacagaaaga 594
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gctattttggacactatgtggaccacaggatggtcacccttggacagaaaga 246
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_f09.g1 MSMg01no520_f09.g1 CHROMAT_FILE:
MSMg01no520_f09.g1 PHD_FILE: MSMg01no520_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:21 2005
(582 letters)
>mm_chr14_99888605_99889587
Length = 983
Score = 1120 bits (579), Expect = 0.0
Identities = 582/583 (99%), Gaps = 1/583 (0%)
Strand = Plus / Plus
Query: 1 cctttcagaaaacaaaaacaaaaacaaaaagcatgatggtaaagaacggattcccaaggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctttcagaaaacaaaaacaaaaacaaaaagcatgatggtaaagaacggattcccaaggt 260
Query: 61 actttgtcaagaccaggctcttaaggggaagcagagggtagtggtttgatgttgaatttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actttgtcaagaccaggctcttaaggggaagcagagggtagtggtttgatgttgaatttg 320
Query: 121 atgtctggggttctgtccc-tggaccactccctggtatatgaacccagtagtcactccac 179
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtctggggttctgtcccctggaccactccctggtatatgaacccagtagtcactccac 380
Query: 180 tttccttgtaacaacatctcctctagatgttggaaatgtgcccctgaatcgcaggaaggc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttccttgtaacaacatctcctctagatgttggaaatgtgcccctgaatcgcaggaaggc 440
Query: 240 acttgggggcagtcccttgggcatcactgcaggatggactgctttctattagctttaact 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttgggggcagtcccttgggcatcactgcaggatggactgctttctattagctttaact 500
Query: 300 gtacagatctgtgctcttcactgtggcgatgttagtcgcacggctctcagccacataaaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtacagatctgtgctcttcactgtggcgatgttagtcgcacggctctcagccacataaaa 560
Query: 360 tgtgtgtcagagctgagatgtccttcaaatgcaaaagaaacaggatcagcctcaaagact 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtgtgtcagagctgagatgtccttcaaatgcaaaagaaacaggatcagcctcaaagact 620
Query: 420 tagggtgtaaataaaaaaaatagactgctaatttttttttttttaaatcaagtacacatg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagggtgtaaataaaaaaaatagactgctaatttttttttttttaaatcaagtacacatg 680
Query: 480 ggcatgatggtatcttggatatattcagtgaaatgtcatattctgttattttatgttttc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggcatgatggtatcttggatatattcagtgaaatgtcatattctgttattttatgttttc 740
Query: 540 ttggttctctctgactctgtctctctccttctccctccttact 582
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttggttctctctgactctgtctctctccttctccctccttact 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 983
Length adjustment: 10
Effective length of query: 572
Effective length of database: 973
Effective search space: 556556
Effective search space used: 556556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
