BAC Information

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BAC

Clone NameMSMg01-520I11
Chromosome14 (Build37)
Map Location 18,585,351 - 18,710,795
singlet/doubletdoublet
Overlap genenone
Upstream geneTpi-rs9
Downstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963, Ube2e2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520I11.T7 (MSMg01no520_i11.b1)MSMg01-520I11.TJ (MSMg01no520_i11.g1)
ACCAG591539AG591540
length737737
length of high quality
(start - end)		649 (72 - 720)621 (83 - 703)
definitionCHROMAT_FILE: MSMg01no520_i11.b1 PHD_FILE: MSMg01no520_i11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:36 2005CHROMAT_FILE: MSMg01no520_i11.g1 PHD_FILE: MSMg01no520_i11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,585,351 - 18,585,999)(18,710,221 - 18,710,795)
sequence
TTCTTGTCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCATTAGATAACAACAGGTTCAAAACAAAGCACATATCT
GGCTTAGAATCTGAAAGGCAAGTTTCAGCATGAGTGAGTTTTTAAGAGCC
TCAAAGAGGGGTTAAATTGAAATTCTGACAACCTTAACTGCATCTCTTTC
TGAAAGCATTGCTGTAATAATGAGAGGCAAAATGTTGGCAGCCACATATT
ATGCTACTGAACAATACTTTATAATTTTGACTCCATGGGGCACTTGCCCT
TTTATAGTCTCAACACTGCAGTTTGATTGCCTGCCTGACCATAGCAATTG
CCTGAGACATTAACCCACACATGGGAAGCATAGTCCAGATCTGCTGGGCT
TTGCTGTGTCCCCTTCAGAGCCAGGATGTCTGTGAGTCAGTGAGTTCTAT
GGCAAAGACTATATAGTGTCTCTGGCTCTAAGCTGTCAACAGAGTCCATA
TTGATGCTTAAGGCCTGAAGAAACTCTGATGACCAGGCCTTCTGGAAAAA
GAACCTGGGTTCCTTATATATGTCAGGAAAAAAAAATCTTCCCACATTCA
TGTCATGGTCTCCTTTAGAATGTTCTAGAACTGACACAAAGTGGTGAAAG
AGACTTGTGTTTCAATTTTGTTCACTTAGTGAGTTATAGCTGAACAATTC
TGATTTGGCTAGTCCAGGGCATCTTGGTAGGTGATGN

NAAAACGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCCATTGGTGGTAGTA
TGAGAAGATGTACTTTAAAATACTTGTTTCTGGGCAAAAGAGATCTTGCT
AATGCAGAGAAACCAGGTATGAATCCCAGCACCTACATAGAAATTCATAA
CCTTCCGTCTGTAACTCTAGTCCCAGAAGACCCAGTGCCCTTTTCTGACT
TCCAAAGTCACCAGGTCCCTGTATGGTACGCACATATATACTCATGTAAA
ACACTCATACCCATAAAATAAAAGGAAATAAGTCTTAAAAATTAAAATAA
TTGTTTCTTTGTGTAGAGCTTGACAACCATATGTAGACTGTCAGTGGCTG
AATTACCTAAAGTGTCATCATGGGCCTGGGTCCTTGAGGACACAATGATG
GACAGGAAGATGATGTCATGGGTAGCAGTGAGGTGGCAAGCATCAAAGTT
GAAGTCAGCATCTGTGGTAATGTCTGGGGAGCATCTACATGGCCCTCATA
CCTCTGTGGCTGACAGCAGTGTGTGCTCAGGGAAATCAAGTTAAATAGAA
GTAATCTGCCAAGCACGCAGAAGCCAGGCTTGCATCACGGGGAAGAGATG
TGTGCCACTTGTAAATGTCACATGAAGATTTTCATAGATAATATGCTTCA
AATGTTTAAGGGTTCTATTTCTTTTTATTTTTAAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_i11.b1 MSMg01no520_i11.b1 CHROMAT_FILE:
MSMg01no520_i11.b1 PHD_FILE: MSMg01no520_i11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:36 2005
         (649 letters)



>mm_chr14_18585151_18586199
          Length = 1049

 Score = 1224 bits (633), Expect = 0.0
 Identities = 645/649 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaacaggttcaaaacaaagcacatatctggcttagaatctgaaaggcaagtttcagcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaacaggttcaaaacaaagcacatatctggcttagaatctgaaaggcaagtttcagcat 260

                                                                       
Query: 61  gagtgagtttttaagagcctcaaagaggggttaaattgaaattctgacaaccttaactgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtgagtttttaagagcctcaaagaggggttaaattgaaattctgacaaccttaactgc 320

                                                                       
Query: 121 atctctttctgaaagcattgctgtaataatgagaggcaaaatgttggcagccacatatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 atctctttctgaaagcattgctgtaataatgagaggcaaaatgttggcagctacatatta 380

                                                                       
Query: 181 tgctactgaacaatactttataattttgactccatggggcacttgcccttttatagtctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgctactgaacaatactttataattttgactccatggggcacttgcccttttatagtctc 440

                                                                       
Query: 241 aacactgcagtttgattgcctgcctgaccatagcaattgcctgagacattaacccacaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacactgcagtttgattgcctgcctgaccatagcaattgcctgagacattaacccacaca 500

                                                                       
Query: 301 tgggaagcatagtccagatctgctgggctttgctgtgtccccttcagagccaggatgtct 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 tgggaagcatagtccagatctgctgggctttgctgtatccccttcagagccaggatgtct 560

                                                                       
Query: 361 gtgagtcagtgagttctatggcaaagactatatagtgtctctggctctaagctgtcaaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgagtcagtgagttctatggcaaagactatatagtgtctctggctctaagctgtcaaca 620

                                                                       
Query: 421 gagtccatattgatgcttaaggcctgaagaaactctgatgaccaggccttctggaaaaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagtccatattgatgcttaaggcctgaagaaactctgatgaccaggccttctggaaaaag 680

                                                                       
Query: 481 aacctgggttccttatatatgtcaggaaaaaaaaatcttcccacattcatgtcatggtct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacctgggttccttatatatgtcaggaaaaaaaaatcttcccacattcatgtcatggtct 740

                                                                       
Query: 541 cctttagaatgttctagaactgacacaaagtggtgaaagagacttgtgtttcaattttgt 600
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 741 cctttagaatgttctagaactgacacaaagtggagaaagagacttgtgtttcaattttgt 800

                                                            
Query: 601 tcacttagtgagttatagctgaacaattctgatttggctagtccagggc 649
           |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tcacttagcgagttatagctgaacaattctgatttggctagtccagggc 849


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no520_i11.g1 MSMg01no520_i11.g1 CHROMAT_FILE:
MSMg01no520_i11.g1 PHD_FILE: MSMg01no520_i11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:36 2005
         (621 letters)



>mm_chr14_18709775_18710795
          Length = 1021

 Score = 1089 bits (563), Expect = 0.0
 Identities = 572/575 (99%)
 Strand = Plus / Minus

                                                                        
Query: 47   tctgggcaaaagagatcttgctaatgcagagaaaccaggtatgaatcccagcacctacat 106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 tctgggcaaaagagatcttgctaatgcagagaaaccaggtatgaatcccagcacctacat 962

                                                                        
Query: 107  agaaattcataaccttccgtctgtaactctagtcccagaagacccagtgcccttttctga 166
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  agaaattcataaccgtccgtctgtaactctagtcccagaagacccagtgcccttttctga 902

                                                                        
Query: 167  cttccaaagtcaccaggtccctgtatggtacgcacatatatactcatgtaaaacactcat 226
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 901  cttccaaagtcaccaggtccctgtatggtacgcacatatatattcatgtaaaacactcat 842

                                                                        
Query: 227  acccataaaataaaaggaaataagtcttaaaaattaaaataattgtttctttgtgtagag 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  acccataaaataaaaggaaataagtcttaaaaattaaaataattgtttctttgtgtagag 782

                                                                        
Query: 287  cttgacaaccatatgtagactgtcagtggctgaattacctaaagtgtcatcatgggcctg 346
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 781  cttgacaaccatatgtagactgtcagtggctgaattacctaaagtgccatcatgggcctg 722

                                                                        
Query: 347  ggtccttgaggacacaatgatggacaggaagatgatgtcatgggtagcagtgaggtggca 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  ggtccttgaggacacaatgatggacaggaagatgatgtcatgggtagcagtgaggtggca 662

                                                                        
Query: 407  agcatcaaagttgaagtcagcatctgtggtaatgtctggggagcatctacatggccctca 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  agcatcaaagttgaagtcagcatctgtggtaatgtctggggagcatctacatggccctca 602

                                                                        
Query: 467  tacctctgtggctgacagcagtgtgtgctcagggaaatcaagttaaatagaagtaatctg 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  tacctctgtggctgacagcagtgtgtgctcagggaaatcaagttaaatagaagtaatctg 542

                                                                        
Query: 527  ccaagcacgcagaagccaggcttgcatcacggggaagagatgtgtgccacttgtaaatgt 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  ccaagcacgcagaagccaggcttgcatcacggggaagagatgtgtgccacttgtaaatgt 482

                                               
Query: 587  cacatgaagattttcatagataatatgcttcaaat 621
            |||||||||||||||||||||||||||||||||||
Sbjct: 481  cacatgaagattttcatagataatatgcttcaaat 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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