Query= MSMg01no521_l10.b1 MSMg01no521_l10.b1 CHROMAT_FILE:
MSMg01no521_l10.b1 PHD_FILE: MSMg01no521_l10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:08 2005
(562 letters)
>mm_chr14_30744275_30745236
Length = 962
Score = 797 bits (412), Expect = 0.0
Identities = 439/454 (96%), Gaps = 10/454 (2%)
Strand = Plus / Minus
Query: 1 gccttcaaaacaaacaaacaaacaaacaaacaaacaaacaaacaaaaagtaaaaatgaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gccttcaaaacaaacaaacaaacaaacaaacaaacaaacaaacaaaaagtaaaaatgaaa 395
Query: 61 aggcaaaaaacaaattgaaaggatgtaggtacaaaacatatccaaatggaagacagaaag 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aggcaagaaacaaattgaaaggatgtaggtacaaaacatatccaaatggaagacagaaag 335
Query: 121 agtttacatggcacaattataacctaagtataagaagataaagactcaactgggcaaaag 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 334 agtttacatggcacaattataacctaagtataagaagataaaggctcaactgggcaaaag 275
Query: 181 gcagagacacagttttcagcaaaaaatggtgtgtgtttatgtatgtgtgtgcatgagtgt 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 274 gcagagacacagttttcagcaaaaaatggtgtgtgtgtatgtatgtgtgtgcatgagtgt 215
Query: 241 atgtgtgtatat----------atgtgtatgtgtgtatatgtgtgaatggttaataaacc 290
|||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atgtgtgtatatgtgtgtgcatatgtgtatgtgtgtatatgtgtgaatggttaataaacc 155
Query: 291 catgaaagaagaggtctcacattaccactcattagggaaatgcaatttaaaaccataatg 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 catgaaagaagaggtctcacattaccactcattagggaaatgcaatttaaaaccataatg 95
Query: 351 agataacacttcatactccttgaatggctcttataaataaggcagacaacgaaaaactgt 410
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 94 agataacacttcatactccttgaatggctcttataaataaggcagataacgaaaaactgt 35
Query: 411 taaagtagtggagaaacagaaactccatatattg 444
|||| |||||||||||||||||||||||||||||
Sbjct: 34 taaactagtggagaaacagaaactccatatattg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_l10.g1 MSMg01no521_l10.g1 CHROMAT_FILE:
MSMg01no521_l10.g1 PHD_FILE: MSMg01no521_l10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:08 2005
(583 letters)
>mm_chr14_30592176_30593157
Length = 982
Score = 1073 bits (555), Expect = 0.0
Identities = 576/583 (98%), Gaps = 1/583 (0%)
Strand = Plus / Plus
Query: 1 tctctatgaagagatgacagtgctagctaccattgacatttcacagacgaggaaaccaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctatgaagagatgacagtgctagctaccattgacatttcacagacgaggaaaccaag 260
Query: 61 gctcaggaggaggaagggtatgtctgcagcatgcaggctggagaggagctcaagcctcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctcaggaggaggaagggtatgtctgcagcatgcaggctggagaggagctcaagcctcta 320
Query: 121 ccactctgtgactgtgatatgtcacctactataagctctctgtatgacagagctgctgga 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccactctgtgactgcgatatgtcacctactataagctctctgtatgacagagctgctgga 380
Query: 181 gtttcaggggaccccagggtcggtctagagaaggcaaacagttgccagatgactgaagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttcaggggaccccagggtcggtctagagaaggcaaacagttgccagatgactgaagga 440
Query: 241 tatggctctggattcttctgcagagactcccagaagcacaatcttgctcgagaggggcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 tatggctctggattcttctgcagagactcccagaagcacaatcttgctcgaaaggggcct 500
Query: 301 agtcctcacactggaacttttcttgatgccattcaactaagatgcctcagtttaagcagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtcctcacactggaacttttcttgatgccattcaactaagatgcctcagtttaagcagt 560
Query: 361 tcccatcagttgggggggggcattcttgctgagggtgcagtattgaattttaatgggaag 420
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcccatcagttggggggga-cattcttgctgagggtgcagtattgaattttaatgggaag 619
Query: 421 aaaaagaatagtaactgtggcaagaataaactggactttgttcttaacagaatttctacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaaaagaatagtaactgtggcaagaataaactggactttgttcttaacagaatttctacc 679
Query: 481 agaatcatccctggtttctttggatctctaaagtgtattagactgtggcacaatggagtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 680 agaatcatccctggtttctttggatctctaaagtgtattagactgtggcacaatggaatg 739
Query: 541 gttctttctgtggtcaaacacctggattttcccatttcttgcc 583
| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 740 gctctttctgtggtcaaacacctggattctcccatttcttgcc 782
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 982
Length adjustment: 10
Effective length of query: 573
Effective length of database: 972
Effective search space: 556956
Effective search space used: 556956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
