BAC Information

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BAC

Clone NameMSMg01-522B01
Chromosome14 (Build37)
Map Location 48,658,338 - 48,763,467
singlet/doubletdoublet
Overlap geneMap1lc3-ps2, Peli2
Upstream geneSamd4, Gch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1, 4930447J18Rik
Downstream geneEG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972, Exoc5, 4932432K03Rik, LOC218997
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522B01.T7 (MSMg01no522_b01.b1)MSMg01-522B01.TJ (MSMg01no522_b01.g1)
ACCAG592712AG592713
length754747
length of high quality
(start - end)		591 (54 - 644)525 (81 - 605)
definitionCHROMAT_FILE: MSMg01no522_b01.b1 PHD_FILE: MSMg01no522_b01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:34 2005CHROMAT_FILE: MSMg01no522_b01.g1 PHD_FILE: MSMg01no522_b01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,762,891 - 48,763,467)(48,658,338 - 48,658,862)
sequence
NNTTTGCTTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTGCAACAACAACAACCATATGCAATTGTGTCCTAGTG
TGCACTTGGGTATTCAAAGAGAAACAAACAGAAGCCATCCATTCACTAGA
TATTTAACGAGCCCCTATCAAGCCCCTCCAACTCTCAGACACTGATACTA
CAGTGACTCAGTCCCTAAGGTCACCAAGCTCATTCAGTGAAAAAGACAAA
GACCAAGCAAGCAAATACAAAAGAAATCACTCCAGAGGCTTTGATAGAAA
CCACTACGGGACAAGGGACAGGACAGCAGAGCTCATACACCAGACTGCCT
GGAAGCCCCGGCCATGTGAGCAAACTTGATTCAATTTCCTGAAAGGGCCC
CAGGGGCTGCAGTGAAGGCATCTCTGTGGCAGAAAGAAGCCATCAGCAGC
CAGGGGTGGGGGTGGGGGGGTTGCTGCCAAGAGCAGGGGCTCTGAGGGGC
TGTAGCCAGGGGAGCCCCAGCCAAGAGCAGGGGCTCTGAGGGGCTGTAGC
CAGGGGAGCCCCAGCCAAGAGCAGGGGCTCTGAGGGGCTGACAGATCCTT
TACATGGTTTGTACGTCCTGAGTCTTCAGGAATGAATACATTAAAGCGTA
TTTAAGAAGTAATGATTAGTATAAGACATTAGGAACACCTCAGGTTTCCA
CAGCTGTACCGATTCATCAATGCTGTGATCTCTTGCTGCCGCTCTTCATT
TCTC

TTTTCGATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCTTGTATTTCCATGGGCA
AGTAGGGGTAATCTGGCATACTTAAATGGACAGCAAGACGCATAGGATTT
CCTTCTTTGCCATCAAATCTATACTGAAAAAGAGAAAATGGAAGGATTCT
GCATATCCTTTGGGCATCTGACGCCCCAGAGGTGTCGTAATATCTGTGTG
TTTGTCTAGAGTCTGATTGCAAGCCCTTGAGTAAACTGTGCATATTAATT
GACCCGTGCCTCTAGGTGAATAATAATTTCGAGCCCTGAGATTGATTTTT
TTCCTGAGCCAGACAATGGAGTGACTAAACCCAGCATTATTCATCACTGG
CCAACCAGTTCAGTGTGCAGGTCGACACAATCACCCTGCTTTGTGTGTCT
CTTCCGTGACTACAGTGGGATGGTTTGAGGAGAGATAAGGCTTTTATGCA
GCATCTGGTTTTCACACCAAGTCTTCCAAAGAGTCACAGACAGAGCATGT
GTGTTGTGTCTTCCTGCTTGCCAGAGGAGTAGGAAAATGTAATGGGGCAG
ACAGTAGGCATGCAACCTTGGAAAGAAGGCAGCAGACCCGAAGGAGACCA
AGTGGATTTTTACCAGTTACATGAGTCATTTTCCCCACGAGGTTAATTAT
TATTAATGATGTTAATTAAGGAATCGTGTGAATTTTTTTTTCTTAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_b01.b1 MSMg01no522_b01.b1 CHROMAT_FILE:
MSMg01no522_b01.b1 PHD_FILE: MSMg01no522_b01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:34 2005
         (591 letters)



>mm_chr14_48762477_48763467
          Length = 991

 Score = 1116 bits (577), Expect = 0.0
 Identities = 577/577 (100%)
 Strand = Plus / Minus

                                                                       
Query: 15  acaacaacaaccatatgcaattgtgtcctagtgtgcacttgggtattcaaagagaaacaa 74
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991 acaacaacaaccatatgcaattgtgtcctagtgtgcacttgggtattcaaagagaaacaa 932

                                                                       
Query: 75  acagaagccatccattcactagatatttaacgagcccctatcaagcccctccaactctca 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 acagaagccatccattcactagatatttaacgagcccctatcaagcccctccaactctca 872

                                                                       
Query: 135 gacactgatactacagtgactcagtccctaaggtcaccaagctcattcagtgaaaaagac 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 gacactgatactacagtgactcagtccctaaggtcaccaagctcattcagtgaaaaagac 812

                                                                       
Query: 195 aaagaccaagcaagcaaatacaaaagaaatcactccagaggctttgatagaaaccactac 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 aaagaccaagcaagcaaatacaaaagaaatcactccagaggctttgatagaaaccactac 752

                                                                       
Query: 255 gggacaagggacaggacagcagagctcatacaccagactgcctggaagccccggccatgt 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 gggacaagggacaggacagcagagctcatacaccagactgcctggaagccccggccatgt 692

                                                                       
Query: 315 gagcaaacttgattcaatttcctgaaagggccccaggggctgcagtgaaggcatctctgt 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 gagcaaacttgattcaatttcctgaaagggccccaggggctgcagtgaaggcatctctgt 632

                                                                       
Query: 375 ggcagaaagaagccatcagcagccaggggtgggggtgggggggttgctgccaagagcagg 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ggcagaaagaagccatcagcagccaggggtgggggtgggggggttgctgccaagagcagg 572

                                                                       
Query: 435 ggctctgaggggctgtagccaggggagccccagccaagagcaggggctctgaggggctgt 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ggctctgaggggctgtagccaggggagccccagccaagagcaggggctctgaggggctgt 512

                                                                       
Query: 495 agccaggggagccccagccaagagcaggggctctgaggggctgacagatcctttacatgg 554
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 agccaggggagccccagccaagagcaggggctctgaggggctgacagatcctttacatgg 452

                                                
Query: 555 tttgtacgtcctgagtcttcaggaatgaatacattaa 591
           |||||||||||||||||||||||||||||||||||||
Sbjct: 451 tttgtacgtcctgagtcttcaggaatgaatacattaa 415


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no522_b01.g1 MSMg01no522_b01.g1 CHROMAT_FILE:
MSMg01no522_b01.g1 PHD_FILE: MSMg01no522_b01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:34 2005
         (525 letters)



>mm_chr14_48658138_48659062
          Length = 925

 Score = 1015 bits (525), Expect = 0.0
 Identities = 525/525 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcttgtatttccatgggcaagtaggggtaatctggcatacttaaatggacagcaagacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcttgtatttccatgggcaagtaggggtaatctggcatacttaaatggacagcaagacg 260

                                                                       
Query: 61  cataggatttccttctttgccatcaaatctatactgaaaaagagaaaatggaaggattct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cataggatttccttctttgccatcaaatctatactgaaaaagagaaaatggaaggattct 320

                                                                       
Query: 121 gcatatcctttgggcatctgacgccccagaggtgtcgtaatatctgtgtgtttgtctaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatatcctttgggcatctgacgccccagaggtgtcgtaatatctgtgtgtttgtctaga 380

                                                                       
Query: 181 gtctgattgcaagcccttgagtaaactgtgcatattaattgacccgtgcctctaggtgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctgattgcaagcccttgagtaaactgtgcatattaattgacccgtgcctctaggtgaa 440

                                                                       
Query: 241 taataatttcgagccctgagattgatttttttcctgagccagacaatggagtgactaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taataatttcgagccctgagattgatttttttcctgagccagacaatggagtgactaaac 500

                                                                       
Query: 301 ccagcattattcatcactggccaaccagttcagtgtgcaggtcgacacaatcaccctgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccagcattattcatcactggccaaccagttcagtgtgcaggtcgacacaatcaccctgct 560

                                                                       
Query: 361 ttgtgtgtctcttccgtgactacagtgggatggtttgaggagagataaggcttttatgca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgtgtgtctcttccgtgactacagtgggatggtttgaggagagataaggcttttatgca 620

                                                                       
Query: 421 gcatctggttttcacaccaagtcttccaaagagtcacagacagagcatgtgtgttgtgtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcatctggttttcacaccaagtcttccaaagagtcacagacagagcatgtgtgttgtgtc 680

                                                        
Query: 481 ttcctgcttgccagaggagtaggaaaatgtaatggggcagacagt 525
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcctgcttgccagaggagtaggaaaatgtaatggggcagacagt 725


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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