Query= MSMg01no522_g03.b1 MSMg01no522_g03.b1 CHROMAT_FILE:
MSMg01no522_g03.b1 PHD_FILE: MSMg01no522_g03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:58 2005
(587 letters)
>mm_chr14_34563194_34564180
Length = 987
Score = 818 bits (423), Expect = 0.0
Identities = 471/509 (92%), Gaps = 35/509 (6%)
Strand = Plus / Minus
Query: 110 aggtcagctctgaaatacacacacacacacacacacacacacacacacacacacacacac 169
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 aggtcagctctgaaat----acacacacacacacacacacacacacacacacacacacac 932
Query: 170 accactatacaggctgagcaagttgtatatatgcacttaaggaagatacgctacagatat 229
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 931 accactatacaggctgagcaaattgtatatatgcacttaaggaagatacgctacagatat 872
Query: 230 gtttaacaacaatttaaaaagaggtatgaaattgaaagagagcaaagatggtccgtgaga 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 gtttaacaacaatttaaaaagaggtatgaaattgaaagagagcaaagatggtccgtgaga 812
Query: 290 aggttttgagggaggaaatggaatgagaaaatgatgaagttatactatgagctcaaaaaa 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 aggttttgagggaggaaatggaatgagaaaatgatgaagttatactatgagctcaaaaaa 752
Query: 350 atttaaaaatatatttaaagacagtattataacactaatgctttaagcattttcagaaat 409
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 aattaaaaatatatttaaagacagtattataacactaatgctttaagcattttcagaaat 692
Query: 410 gttggcactatggccagacacattgttatcattattttgtctaacttggctggctaaaag 469
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tttggcactatggccagacacattgttatcattattttgtctaacttggctggctaaaag 632
Query: 470 cgggcaggtggttctaactccggtcattaatgctagaatgatgggggaggcttactcaac 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 cgggcaggtggttctaactccggtcattaatgctagaatgatgggggaggcttactcaac 572
Query: 530 attgc-------------------------------ttttttttgccagtaaggacaggg 558
||||| ||||||||||||||||||||||||
Sbjct: 571 attgctttttttttttttttttttttttttttttttttttttttgccagtaaggacaggg 512
Query: 559 tttggtgtctcctttgcatgctcttgtct 587
|||||||||||||||||||||||||||||
Sbjct: 511 tttggtgtctcctttgcatgctcttgtct 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_g03.g1 MSMg01no522_g03.g1 CHROMAT_FILE:
MSMg01no522_g03.g1 PHD_FILE: MSMg01no522_g03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:58 2005
(409 letters)
>mm_chr14_34416556_34417364
Length = 809
Score = 733 bits (379), Expect = 0.0
Identities = 397/411 (96%), Gaps = 14/411 (3%)
Strand = Plus / Plus
Query: 1 caagggaaattaattttggctctaattaaaaagagctgttgaacacatgtttaacgatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagggaaattaattttggctctaattaaaaagagctgttgaacacatgtttaacgatgt 260
Query: 61 ggttgggaggacagaggattgccattatcagaggttcttagcacaaagctcagcatctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggttgggaggacagaggattgccattatcagaggttcttagcacaaagctcagcatctca 320
Query: 121 gctgcctctgggagtgctcctcagtgctcctcagtgctccacaggtgagtcctttgcctc 180
|||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 gctgcctctgggagtgctcctcagtgctcc----------acaggtgagtcctttgcctc 370
Query: 181 actatcagctggaatgcttctgttcgtttccttctataaa----gatattttctttcttc 236
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 371 actatcagctggaatgcttctgttcgtttccttctataaacaaagatattttctttcttc 430
Query: 237 tgttttaaagtagaatttccaagaaattaaaaatgcaactcatataaatttaaaatcaca 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tgttttaaagtagaatttccaagaaattaaaaatgcaactcatataaatttaaaatcaca 490
Query: 297 cctaagatcttattaagcttattaattgctggaggaagcagaaggatagctaaggccatt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cctaagatcttattaagcttattaattgctggaggaagcagaaggatagctaaggccatt 550
Query: 357 ctgagacagcttgaagatctagattcttaattggaattttgaactaagttt 407
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ctgagacagcttgaagatctagattcttaattggaattttgaactaagttt 601
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space: 320000
Effective search space used: 320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
