BAC Information

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BAC

Clone NameMSMg01-522K06
Chromosome14 (Build37)
Map Location 20,326,401 - 20,327,051
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627717, LOC238963, Ube2e2, LOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344, LOC619996, EG434616, LOC675165, 1700110I01Rik
Downstream geneEG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522K06.T7 (MSMg01no522_k06.b1)MSMg01-522K06.TJ (MSMg01no522_k06.g1)
ACCAG593150AG593151
length769752
length of high quality
(start - end)
655 (49 - 703)226 (81 - 306)
definitionCHROMAT_FILE: MSMg01no522_k06.b1 PHD_FILE: MSMg01no522_k06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:17 2005CHROMAT_FILE: MSMg01no522_k06.g1 PHD_FILE: MSMg01no522_k06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:17 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NGACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGT
TTCTCTGGAGTTTAGCTTCCTGAGTTCTTAGTATATATTGGATATTAGGC
CTCTATGGGACGTAGGATTGGTAAAGATCTGAACCCAATCTGTTTGGTTG
CTGTTTTGTCCTATTGACAGTGTCATTTGCCTTACAGAAGGTTTGCAATT
TTATGAGGTCTCATTTGTCAATTCTTGATCTTAGAGCATAAGCTATAGGT
GTTCTATTTAGGAAAATTTCCCCTATGCCCATGTGTTTAAGGCTCTTCCC
GACTTTCTTTTCTATTAATTTCAGTGTATCTGGTTTCATGCGGAGGTCCT
TGATCCACCTGGATTTGAGCTTTATACAAGGAGAAAAGAATGGGTCAATT
TGCATTCTGCTACATGCTAACCAACAGTTGAACCAGCACCATTTCTTGAA
AAATGCTGTCTTTTGTCTGCTGCATGTTTTTACCTCCTTTGTCAAAGGGC
ATTGTCTTTTTCAGTGAGAGAAGCCCTTCCCTGTTCTGAACCCTCCTTTA
CCACATGCAAAGACACACATTATATCCATGACTGCTCAGCCATGTGCCCA
GCCTTTTATTCAGGCTGAATTGGTACTTCCCTTATCCCCCAGGTCCTACT
GTGTCCTTTTTTGTTTTCTTTCAGAAAGAAATCAATACCTCCTTGTAGAT
ACTGGGGCACAGCACTGCA
ACACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTT
ATCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCTCTAACGAG
ATGATCATGTGGTTTTGTCTTTGAGTTTGTTTATATAATGGACTACATTG
ATGGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTAC
TTGGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGA
GAATTTTATTGAGGATTTTTGCATCGATATTCCATAAAAGAAATTGGGCC
TTGAAATTCTCCAACCTTTGGTGGGAACTTTTCGGGGGGTTTAAGGTATC
CAAAAAATAATAGGGGGGCTTTCATAAAAAAAAAATTTGGGGGAAAAAAA
AACCCCTTTCCAACATTTTCTAAATCTGTGGGGGGAAAAAAAAAAATTTT
TGTGTCGACCAAATCGCGGGGAAATAAAAAACTCTTCCTTTTTTTATGGG
GGGGGCCCCGAAAAAAAAAAAAAAGCTTTTGCGCAAAAAAAAAGTTTTCT
TGGGGGCCGCGGGGGGTTTTTTTTTTTTTTTTTTGGGGGGGGGGGGGGGG
AGACTTTTTCTTTTTTTTTTGGTTGGGGGGGCGCTTTCTTTCTATTTTTT
TTTTTTTATATAATTAAAAAAAAAAAAATATAGACTATGAACTCGCCTCC
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_k06.b1 MSMg01no522_k06.b1 CHROMAT_FILE:
MSMg01no522_k06.b1 PHD_FILE: MSMg01no522_k06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:17 2005
         (655 letters)



>mm_chr14_20326197_20327251
          Length = 1055

 Score = 1147 bits (593), Expect = 0.0
 Identities = 637/653 (97%), Gaps = 4/653 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgtttagctctgagccccattttttaatggggttatttgtttctctggagtt 64
           |||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||
Sbjct: 205 gaattctttgtttagctctgggctccattttttaattgggttatttgtttctctggagtt 264

                                                                       
Query: 65  tagcttcctgagttcttagtatatattggatattaggcctctatgggacgtaggattggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagcttcctgagttcttagtatatattggatattaggcctctatgggacgtaggattggt 324

                                                                       
Query: 125 aaagatctgaacccaatctgtttggttgctgttttgtcctattgacagtgtcatttgcct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaagatctgaacccaatctgtttggttgctgttttgtcctattgacagtgtcatttgcct 384

                                                                       
Query: 185 tacagaaggtttgcaattttatgaggtctcatttgtcaattcttgatcttagagcataag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tacagaaggtttgcaattttatgaggtctcatttgtcaattcttgatcttagagcataag 444

                                                                       
Query: 245 ctataggtgttctatttaggaaaatttcccctatgcccatgtgtttaaggctcttcccga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctataggtgttctatttaggaaaatttcccctatgcccatgtgtttaaggctcttcccga 504

                                                                       
Query: 305 ctttcttttctattaatttcagtgtatctggtttcatgcggaggtccttgatccacctgg 364
           |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 505 ctttattttctattaatttcagtgtatctggtttcatgcagaggtccttgatccacctgg 564

                                                                       
Query: 365 atttgagctttatacaaggagaaaagaatgggtcaatttgcattctgctacatgctaacc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atttgagctttatacaaggagaaaagaatgggtcaatttgcattctgctacatgctaacc 624

                                                                       
Query: 425 aacagttgaaccagcaccatttcttgaaaaatgctgtcttttgtctgctgcatgttttta 484
            ||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||
Sbjct: 625 gacagttgaaccagcaccatttcttgaaaaatgctgtcttttttccgctggatgttttta 684

                                                                       
Query: 485 cctcctttgtcaaagggcattgtctttttcagtgagagaagcccttccctgttctgaacc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cctcctttgtcaaagggcattgtctttttcagtgagagaagcccttccctgttctgaacc 744

                                                                       
Query: 545 ctcctttacca--catgcaaagacacacattatatccatgactgctcagccatgtgccca 602
           |||||||||||  ||  ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctcctttaccaaaca--caaaggcacacattatatccatgactgctcagccatgtgccca 802

                                                                
Query: 603 gccttttattcaggctgaattggtacttcccttatcccccaggtcctactgtg 655
            |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tccttttatccaggctgaattggtacttcccttatcccccaggtcctactgtg 855


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)