BAC Information

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BAC

Clone NameMSMg01-523D21
Chromosome14 (Build37)
Map Location 103,861,945 - 103,862,552
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC669278, Kctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797
Downstream geneScel, LOC100043448, Slain1, Ednrb, Pou4f1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523D21.T7 (MSMg01no523_d21.b1)MSMg01-523D21.TJ (MSMg01no523_d21.g1)
ACCAG593608AG593609
length747756
length of high quality
(start - end)
586 (53 - 638)609 (76 - 684)
definitionCHROMAT_FILE: MSMg01no523_d21.b1 PHD_FILE: MSMg01no523_d21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:06 2005CHROMAT_FILE: MSMg01no523_d21.g1 PHD_FILE: MSMg01no523_d21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTATGCTTTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCACCTGACGAATACCGAATGGCAGAGAAGCACCTGAA
AAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCC
TGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGT
GACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTG
TTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGT
TCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTC
CTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTC
CACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAAC
CCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTAC
ACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCT
AGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATT
CACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCC
AAAACCTAGGATACCCAAGATATAAGATACAATTTCCTAAACACATGANA
CTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAA
ACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTATTATCTGAAATAATTCTCTTA
AAAACCTCCACAGTTTCAATTGTCAATCATACGTACACATACACCCCAAT
ACACATACCTATCAGACATAGGTTAGATGAGTCTTCAGACTTGGTATACT
TCTCACTGACTGCACCGTGCCGTGTCTAGCATTCAGTGAGTAACCAGGAC
AGTCAGCGAATGAGAATGTGCGCAAACTCAGAGCGTACAGCGAGGCATGC
CAATATTTGATATTGTTGGTCTTGGGGTGCTTCCCAAGAATGAGGTGATC
TCGTGTGATGAGATAACAGAGGACTTGTGTCATAAAGCCAGATCTGAGGG
GAAAGCTGGGGAGAGGTCGGAATGAGGTGGACAGAGGGAAGAAAAGAAAG
GCTTTCTGTGAGCTCCTGCTAGAAACACGCTCAGCGGCTGAGGGACACAG
TAGAGAAACATCTGTGCTCCTCTTTTGTATTTCGGCATCCCGGACACATT
AAGCCGAAGGCCATTCTTACTGGGCTTCCTAAGCCATTTGAGATGTAACA
AGGTGTTAGATCTGTGATACTTATCTCCCAGTGGTGGTGTGAGGATTAAA
ATGGATTAAAGTACATAATGTCTGTAGCATGCTGCTACAGAACAAGCATT
AGCCTTGGCTGCTTGGAGCCCTTCTCTCTGGGACTCTTCAGCATGGCCTT
CTGGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_d21.g1 MSMg01no523_d21.g1 CHROMAT_FILE:
MSMg01no523_d21.g1 PHD_FILE: MSMg01no523_d21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:06 2005
         (609 letters)



>mm_chr14_103861815_103862822
          Length = 1008

 Score = 1077 bits (557), Expect = 0.0
 Identities = 596/613 (97%), Gaps = 9/613 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttattatctgaaataattctcttaaaaacctccacagtttcaattgtcaatcatacgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 cttattatctgaaataattctcttaaaaacctccacagtttcaattgtcaatcatacgta 679

                                                                       
Query: 61  cacatacaccccaatacacatacctatcagacataggttagatgagtcttcagacttggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 cacatacaccccaatacacatacctatcagacataggttagatgagtcttcagacttggt 619

                                                                       
Query: 121 atacttctcactgactgcaccgtgccgtgtctagcattcagtgagtaaccaggacagtca 180
           |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 618 atacttctcactcactgcacagtgccgtgtctagcattcagtgagtaaccaggacagtca 559

                                                                       
Query: 181 gcgaatgagaatgtgcgcaaactcagagcgtacagcgaggcatgccaatatttgatattg 240
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 558 gcgaatgagaacgtgcgcaaactcagagcgtacagcgaggcatgccaatatttgatcttg 499

                                                                       
Query: 241 ttggtcttggggtgcttcccaagaatgaggtgatctcgtgtgatgagataacagaggact 300
           ||||||||||||||| |||||||||||||||||||||||||     |||||||| |||||
Sbjct: 498 ttggtcttggggtgcctcccaagaatgaggtgatctcgtgt-----gataacaggggact 444

                                                                       
Query: 301 tgtgtcataaagccagatctgaggggaaagctggggagaggtcggaatgaggtggacaga 360
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgtgtcataaagccagagctgaggggaaagctggggagaggtcggaatgaggtggacaga 384

                                                                       
Query: 361 gggaagaaaagaaaggctttctgtgagctcctgctagaaacacgctcagcggctgaggga 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggggagaaaagaaaggctttctgtgagctcctgctagaaacacgctcagcggctgaggga 324

                                                                       
Query: 421 cacagtagagaaacatctgtgctcctcttttgtatttcggcatccc---g-gacacatta 476
           ||||||||||||||||||||||||||||||||||||||||||||||   | |||||||||
Sbjct: 323 cacagtagagaaacatctgtgctcctcttttgtatttcggcatcccaaagagacacatta 264

                                                                       
Query: 477 agccgaaggccattcttactgggcttcctaagccatttgagatgtaacaaggtgttagat 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agccgaaggccattcttactgggcttcctaagccatttgagatgtaacaaggtgttagat 204

                                                                       
Query: 537 ctgtgatacttatctcccagtggtggtgtgaggattaaaatggattaaagtacataatgt 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ctgtgatacttatctcccagtggtggtgtgaggattaaaatggattaaagtacataatgt 144

                        
Query: 597 ctgtagcatgctg 609
           |||||||||||||
Sbjct: 143 ctgtagcatgctg 131


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1008
Length adjustment: 10
Effective length of query: 599
Effective length of database: 998
Effective search space:   597802
Effective search space used:   597802
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)