Query= MSMg01no523_l01.b1 MSMg01no523_l01.b1 CHROMAT_FILE:
MSMg01no523_l01.b1 PHD_FILE: MSMg01no523_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:41 2005
(577 letters)
>mm_chr14_118025190_118026166
Length = 977
Score = 942 bits (487), Expect = 0.0
Identities = 524/537 (97%), Gaps = 2/537 (0%)
Strand = Plus / Minus
Query: 10 ggaattcttaatgttatagcaaaacaggggggaaaagaaaaactgtaagagctatctgat 69
|||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 535 ggaattctcaatggcatagcaaaacagggggggaaagaaaaactgtaagagctatctgat 476
Query: 70 ggagcactgagactgagaagaggagagaggaggggagcatttgaaatgacgttagccaga 129
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 475 ggagcactgagactgagaagaggagagaggaggggagcatttgaaatgacattagccaga 416
Query: 130 acttgcccctaattctgctcatcattgaatataaccaacacacaggggagcttatatttt 189
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 acttgtccctaattctgctcatcattgaatataaccaacacacaggggagcttatatttt 356
Query: 190 agtttttaaaaatcaactgattttgtttgagacattacatttcacatcaaactgtcagct 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 agtttttaaaaatcaactgattttgtttgagacattacatttcacatcaaactgtcagct 296
Query: 250 aacaaccaggtatattgatagcataaagatttatgttaggatagccaatgagcaccaagg 309
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 295 aacaaccaggtatattgatagcataaagatttatgttagggtagccaatgagcaccaagg 236
Query: 310 ggaaacaattaaggagtaactattaagggtctgtgagatggctcagtgggtataggcact 369
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 235 ggaaacaattaaggagtaactattaagggcctgtgagatggctcagtgggtataggcact 176
Query: 370 tgccaccaagcctgagttaattcctggaagtcacatggtataaggacactctcgggtttc 429
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 175 tgccaccaagcctgagttaattcctggaagtcacatggtacaaggacactctcgggtttc 116
Query: 430 ctttgactgccatgtgagggtcttggcacaaatacacccacaaataacacatgaatatat 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 ctttgactgccatgtgagggtcttggcacaaatacacccacaaataacacatgaatatat 56
Query: 490 ttaaaaaaaacaattaaaagactattgttcttacaaataacctccacacacattctt 546
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 55 --aaaaaaaaccattcaaagactattgttcttacaaataacctccacacacattctt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no523_l01.g1 MSMg01no523_l01.g1 CHROMAT_FILE:
MSMg01no523_l01.g1 PHD_FILE: MSMg01no523_l01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:41 2005
(651 letters)
>mm_chr14_117865767_117866819
Length = 1053
Score = 1205 bits (623), Expect = 0.0
Identities = 645/653 (98%), Gaps = 2/653 (0%)
Strand = Plus / Plus
Query: 1 tctgaaaccttataatttggaaatgctgtgtgaggtcatataacataacttgccaacata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgaaaccttataatttggaaatgctgtgtgaggtcatataacataacttgccaacata 260
Query: 61 acttatttaattgaagtttttaaaagctgtctcctattgaggctgctagcctgggtgact 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 acttatttaattgaagtttttaaaagctgtctcctattgaggctgctagactgggtgact 320
Query: 121 tcaaaggaaagtgagtacagataagagtggagaaccagactagattttaagaaatcagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaaaggaaagtgagtacagataagagtggagaaccagactagattttaagaaatcagag 380
Query: 181 ggtgggggaaggatggattagtcgaaaggattggaaacaaccaataaagaagatgaaaac 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtgggggaaggagggattagtcgaaaggattggaaacaaccaataaagaagatgaaaac 440
Query: 241 cacagaatatgttaaaggacccaaatgaaaaggcaatatcaagctggcgaaagaaagcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacagaatatgttaaaggacccaaatgaaaaggcaatatcaagctggcgaaagaaagcca 500
Query: 301 tgacagttccacaaatgggtccgtaaaagatggactgggtcctgtgcacgtccttggagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgacagttccacaaatgggtccgtaaaagatggactgggtcctgtgcacgtccttggagg 560
Query: 361 tcttgactgacagctgcagtgtagcaggagggagaatagaagaagggtatttttaatgtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcttgactgacagctgcagtgtagcaggagggagaatagaagaagggtatttttaatgtg 620
Query: 421 tgtgtgt--atgctgataaggggatatacttgtgttcttgggtacagagataagaggtgg 478
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtgtgtgtatgctgataaggggatatacttgtgttcttgggtacagagataagaggtgg 680
Query: 479 gtatcaggtgtcacttggactattgccttcgtgcatatctttttccaggagcatgtctta 538
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 681 gtatcaggtgtcacttggactactgccttcgtgcgtatctttttccaggagcatgtctta 740
Query: 539 tggtagccaacattaatgttttatgtgggttttatatttttgtacttggatgaccacctt 598
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tggtaaccaatattaatgttttatgtgggttttatatttttgtacttggatgaccacctt 800
Query: 599 ggaataaaacctgaagtacagtggcctctggctgctacatttttttttcactc 651
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggaataaaacctgaagtacagtggcctctggctgctacatttttttttcactc 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1053
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1043
Effective search space: 668563
Effective search space used: 668563
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
