Query= MSMg01no524_g18.b1 MSMg01no524_g18.b1 CHROMAT_FILE:
MSMg01no524_g18.b1 PHD_FILE: MSMg01no524_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:42 2005
(666 letters)
>mm_chr14_115045322_115046390
Length = 1069
Score = 1181 bits (611), Expect = 0.0
Identities = 657/685 (95%), Gaps = 23/685 (3%)
Strand = Plus / Minus
Query: 5 gaattc-caaattatgctttctgaactc-aattt-ccccattaaagttgactttggaata 61
|||||| ||||||||||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct: 700 gaattcacaaattatgctttctgaactcaaatttcccccattaaagttggctttggaata 641
Query: 62 tattatcgtgtttgtgctcatcttgacaaaagtaaggtctttgcccctttctgatgtttt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 tattatcgtgtttgtgctcatcttgacaaaagtaaggtctttgcccctttctgatgtttt 581
Query: 122 tctgtgtccagaaactgtaagaggtcaataaatgttcttttaatgaaagagtatttagtt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tctgtgtccagaaactgtaagaggtcaataaatgttcttttaatgaaagagtatttagtt 521
Query: 182 agttccttgtaattgtatattatggtggcatccttaatatattttatataaaggaaaaat 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 agttccttgtaattgtatattatggtggcatccttaatatattttatataaaggaaaaat 461
Query: 242 ctcttatctctatttcctaaaagcaaacgatagttgatgtggacgtctcagtccatcagc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ctcttatctctatttcctaaaagcaaacgatagttgatgtggacgtctcagtccatcagc 401
Query: 302 ttggtttagagtttaccttacatcgcacctggtaaggatgaattgcttggtctagcatct 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 400 ttggtttagagtttaccttacatcgcacctggtaaggatgaattgcttggtctagtatct 341
Query: 362 aagattaatctccacatttcccatctacccatataaatgcattttcctcaaattcttcct 421
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 340 aagattaatctccacatttcccatctacccatataaatgtattttcctcaaattcttcct 281
Query: 422 tgtatgtattgtatgatcattttttccattttgtagaacttttgctgtggtaaaaccatg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tgtatgtattgtatgatcattttttccattttgtagaacttttgctgtggtaaaaccatg 221
Query: 482 gcatgtttcctatatcatctttatttatttatttatttagatttatttatctatctgggt 541
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 gcatgtttcctatatcgtctttatttatttatttatttagatttatttatctatctgggt 161
Query: 542 gttttgtctgcatgaacatctacaaaccagaagat--------------------ggcat 581
|||||||||||||| |||||||||||||||||||| |||||
Sbjct: 160 gttttgtctgcatgcacatctacaaaccagaagatggcattgaaattcatgagacggcat 101
Query: 582 tgaaattcatgagactagaatcatagaagtttctcacaatgtagaggctgggattgaact 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 tgaaattcatgagactagaatcatagaagtttctcacaatgtagaggctgggattgaact 41
Query: 642 caggatctctcagtgctttctagct 666
|||||||||||||||||||||||||
Sbjct: 40 caggatctctcagtgctttctagct 16
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1069
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1059
Effective search space: 694704
Effective search space used: 694704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no524_g18.g1 MSMg01no524_g18.g1 CHROMAT_FILE:
MSMg01no524_g18.g1 PHD_FILE: MSMg01no524_g18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:42 2005
(632 letters)
>mm_chr14_114860301_114861329
Length = 1029
Score = 1176 bits (608), Expect = 0.0
Identities = 625/632 (98%), Gaps = 3/632 (0%)
Strand = Plus / Plus
Query: 1 tctagaagaaaagtttacttccaagtcatggggaatgagatatacccatcaacatatctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctagaagaaaagtttacttccaagtcatggggaatgagatatacccatcaacatatctt 260
Query: 61 tgttctccctgtagtaatatgtttcatagaaaaatgtatcaggaaatctaatgtgcctag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttctccctgtagtaatatgtttcatagaaaaatgtatcaggaaatctaatgtgcctag 320
Query: 121 gcagggtgtaactgctatggatttaattttctttttcacagaacttgaaacttattttgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagggtgtaactgctatggatttaattttctttttcacagaacttgaaacttattttgg 380
Query: 181 ataatattaaacaccatagctttttttttttgaaacattgtttcattgaactgtaacaag 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 ataatattaaacaccatagctttttttt---gaaacattgtttcattgaactgtaacaag 437
Query: 241 caacaatgacaattcaataattttataatatcaaattattatttatttgttccaagccag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 caacaatgacaattcaataattttataatatcaaattattatttatttgttccaagccag 497
Query: 301 aatatatagggaccaacactagtttttccactcattaaataataatatcatataaaattt 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 498 aatatatagggaccaacactagtttttccactcattaaataataatatcgtataaaattt 557
Query: 361 taagttgttatatttatgtgtacatgaatatcaaagctaataactgacttacctggtaat 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 558 taagttgttatatttatgtgtacatgaatatcaaagctagtaactgacttacctggtaat 617
Query: 421 gtaagcattaataaagctaatatgggtcatgagcttccttccagaccaagtataggaaaa 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 618 gtaagcattaataaagctaatatgggtcatgagcttccttccagaccaagtataagaaaa 677
Query: 481 catgcataaatgaatctataattctcaatgttaccatgaaaggtatgaatccatattaat 540
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 678 catgcataaatgaatctataattctcattgttaccatgaaaggtatgaatccatattaat 737
Query: 541 caaattttatctcttctatgtagacattataatctttaaaacacacaaagtagaggggac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 caaattttatctcttctatgtagacattataatctttaaaacacacaaagtagaggggac 797
Query: 601 tatggattctaaactctgaatttttaatgtat 632
||||||||||||||||||||||||||||||||
Sbjct: 798 tatggattctaaactctgaatttttaatgtat 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1029
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1019
Effective search space: 633818
Effective search space used: 633818
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
