BAC Information

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BAC

Clone NameMSMg01-524H16
Chromosome14 (Build37)
Map Location 55,637,507 - 55,815,623
singlet/doubletdoublet
Overlap geneNgdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938
Upstream geneA630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7
Downstream geneDhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524H16.T7 (MSMg01no524_h16.b1)MSMg01-524H16.TJ (MSMg01no524_h16.g1)
ACCAG594547AG594548
length772745
length of high quality
(start - end)		567 (39 - 605)584 (72 - 655)
definitionCHROMAT_FILE: MSMg01no524_h16.b1 PHD_FILE: MSMg01no524_h16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:46 2005CHROMAT_FILE: MSMg01no524_h16.g1 PHD_FILE: MSMg01no524_h16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,637,507 - 55,638,070)(55,815,191 - 55,815,623)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAC
TGTGTAGACCAGGCTGGCCTTGAGCATGTGCCACAATACCCAGCCCAAGA
GAATATTTAAACAGAATATTTCATGGGTAAATGAAAATATAAAAATCATG
TAGTGTGTCAGTAAGGATGAGTGATTTTTTTTTTTAAAGCATGGGAGCAA
AGCAGATTTTTATATTTTTAGAATAACAAACATTTTAAATAATCTTTTTT
TAAAGATGTATTTATTTATGTATGTGAGTACACTGTAGCTGTACAGATGG
TTGTGAGCCTTCATGTGGTTGTTGGGAATTGAATTTTGACCTCTGCTCGC
TCTGGTCAACTCCCCTCCCTCAGTTCCTGCTCGCTCCAGCCGGCCCAAAG
ATTTATTTATTGTTATACATAAGTACACTGTAGCTGACTTCAGACACACC
AGAAGAGGGCATCAGATCCCATTGCAGATGGTTGTGAGCCACCATGTGGT
TGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTACC
TGCTGAGCCAGCTCTCCAGCCCTGTAATAATCTTTTTCCTACCTGTTGCT
TTTGTCCATACTATTTATTACTTATTCTTCTTACTTTTATTATTTGTTAC
TATTTTGTTTGTGTGGGGGTTTGNNTGTTATATGGGTTGGNGGTTTGTTT
TTGAGGCATGGTCTCACTGTGTAGCTCTGGCCGCCCTGGAACTCTCTATG
TAAATCAGGTTAGCCTCAAAAC

ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTATTCAGTAAAGGAATTTTATTTCTGCTG
AATAAATCTGGAAGAGATGTCAGAAAATGAGGAGGAAACGTACACACTCA
TAAATTCAGACAGTTTATGCATTGTGAAGGTGACGGATTCTGCTGACAGA
TAACTCAATAAGTCACTCACATTTTTCTAACCCAGGTGTTTAAAAGCTGC
ACAGGAGCCTCATACGTGGCTGCTGTGAACAGGTGTGAAGCCTATGGCGG
CTGCTCTGGCTATATCCATCAAAATGGTAAATCACACTTTGATCCAACAA
TCCCTTCCCAGGCGTTTTCTTAAAGCATACCCTTACCATGGGAAATGACT
TGGTAAAAGGCTGTACCTGGTGGCATTGTTTGTGTATAGTGGCCTTAACA
CTCTATTAGTGAGGAGTAGTTGAATGTACAGTGGCATATATTGTTACATA
TGTAGTATATCATTTTTATATGTTTCTAAGTCAGTGCACACTGTCAAAAC
AAAATACCAGTGGCTGAGTGCCTTAACAAAAGCCTTGTATTTCTTGCAGT
TCTGAAGACTAGGAAAGTCTGTTGAGTAGATTCCTAGTGAGGGCTGCTCT
CTCANGACCTGTTGGATTCACCTCCTGTTGTGTCCTGATGAAAGAGAGCG
AGACAGAGAGAAGGACAGACATTGACAGGGGCAGAGACAGAGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_h16.b1 MSMg01no524_h16.b1 CHROMAT_FILE:
MSMg01no524_h16.b1 PHD_FILE: MSMg01no524_h16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:46 2005
         (567 letters)



>mm_chr14_55637304_55638270
          Length = 967

 Score = 1091 bits (564), Expect = 0.0
 Identities = 564/564 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactgtgtagaccaggctggccttgagcatgtgccacaatacccagcccaagag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactgtgtagaccaggctggccttgagcatgtgccacaatacccagcccaagag 263

                                                                       
Query: 64  aatatttaaacagaatatttcatgggtaaatgaaaatataaaaatcatgtagtgtgtcag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatatttaaacagaatatttcatgggtaaatgaaaatataaaaatcatgtagtgtgtcag 323

                                                                       
Query: 124 taaggatgagtgatttttttttttaaagcatgggagcaaagcagatttttatatttttag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taaggatgagtgatttttttttttaaagcatgggagcaaagcagatttttatatttttag 383

                                                                       
Query: 184 aataacaaacattttaaataatctttttttaaagatgtatttatttatgtatgtgagtac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aataacaaacattttaaataatctttttttaaagatgtatttatttatgtatgtgagtac 443

                                                                       
Query: 244 actgtagctgtacagatggttgtgagccttcatgtggttgttgggaattgaattttgacc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 actgtagctgtacagatggttgtgagccttcatgtggttgttgggaattgaattttgacc 503

                                                                       
Query: 304 tctgctcgctctggtcaactcccctccctcagttcctgctcgctccagccggcccaaaga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tctgctcgctctggtcaactcccctccctcagttcctgctcgctccagccggcccaaaga 563

                                                                       
Query: 364 tttatttattgttatacataagtacactgtagctgacttcagacacaccagaagagggca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttatttattgttatacataagtacactgtagctgacttcagacacaccagaagagggca 623

                                                                       
Query: 424 tcagatcccattgcagatggttgtgagccaccatgtggttgctgggatttgaactcagga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcagatcccattgcagatggttgtgagccaccatgtggttgctgggatttgaactcagga 683

                                                                       
Query: 484 cctctggaagagcagtcagtgctcttacctgctgagccagctctccagccctgtaataat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cctctggaagagcagtcagtgctcttacctgctgagccagctctccagccctgtaataat 743

                                   
Query: 544 ctttttcctacctgttgcttttgt 567
           ||||||||||||||||||||||||
Sbjct: 744 ctttttcctacctgttgcttttgt 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no524_h16.g1 MSMg01no524_h16.g1 CHROMAT_FILE:
MSMg01no524_h16.g1 PHD_FILE: MSMg01no524_h16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:46 2005
         (584 letters)



>mm_chr14_55815191_55816174
          Length = 984

 Score =  799 bits (413), Expect = 0.0
 Identities = 428/433 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattcagtaaaggaattttatttctgctgaataaatctggaagagatgtcagaaaatgag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 433 tattcagtaaaggaattttatttctgctgaataaatctggaagagatgtcagaaaacgag 374

                                                                       
Query: 61  gaggaaacgtacacactcataaattcagacagtttatgcattgtgaaggtgacggattct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gaggaaacgtacacactcataaattcagacagtttatgcattgtgaaggtgacggattct 314

                                                                       
Query: 121 gctgacagataactcaataagtcactcacatttttctaacccaggtgtttaaaagctgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gctgacagataactcaataagtcactcacatttttctaacccaggtgtttaaaagctgca 254

                                                                       
Query: 181 caggagcctcatacgtggctgctgtgaacaggtgtgaagcctatggcggctgctctggct 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 caggagcctcatacatggctgctgtgaacaggtgtgaagcctatggcggctgctctggct 194

                                                                       
Query: 241 atatccatcaaaatggtaaatcacactttgatccaacaatcccttcccaggcgttttctt 300
           || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 193 atgtccatcaaaatggtaaagcacactttgatccaacaatcccttcccaggcgttttctt 134

                                                                       
Query: 301 aaagcatacccttaccatgggaaatgacttggtaaaaggctgtacctggtggcattgttt 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 133 aaagcatacccttaccatgggaaatgacttggtaaaaggccgtacctggtggcattgttt 74

                                                                       
Query: 361 gtgtatagtggccttaacactctattagtgaggagtagttgaatgtacagtggcatatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  gtgtatagtggccttaacactctattagtgaggagtagttgaatgtacagtggcatatat 14

                        
Query: 421 tgttacatatgta 433
           |||||||||||||
Sbjct: 13  tgttacatatgta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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