Query= MSMg01no524_m14.b1 MSMg01no524_m14.b1 CHROMAT_FILE:
MSMg01no524_m14.b1 PHD_FILE: MSMg01no524_m14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:09 2005
(526 letters)
>mm_chr14_117621538_117622463
Length = 926
Score = 625 bits (323), Expect = 0.0
Identities = 415/481 (86%), Gaps = 59/481 (12%)
Strand = Plus / Plus
Query: 5 gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatgttcagcatcc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatgttcagcatcc 222
Query: 65 ttaatcgtcagggaaacgcaaatcaaaacaaccctgagattccacctcacaccagtcaga 124
|||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 223 ttaatcatcagggaaatgcaaatcaaaacaaccctgagattccgcctcacaccagtcaga 282
Query: 125 atggctaagatcaaaaattcaggtgacagcagatg------------------------- 159
|||||||||||||||||||||||||||||||||||
Sbjct: 283 atggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagagga 342
Query: 160 -----------------gtgggattgcaagctcgtataacttgtctattttaatgataat 202
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 acactccttcattgttggtgggattgcaagctcgtataacttgtctattttaatgataat 402
Query: 203 catcatataatatgaagtatagagacgaaatgcatggtggaatataaggattatttcaaa 262
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 403 catcatataatatgaagtatagagacgaaatgcatggtggagtaaaaggattatttcaaa 462
Query: 263 actcataacagaacatgtttagtaaatctttccacccgcttgaaatgtgtcacacacaca 322
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 463 actcataatagaacatgtttagtaaatctttccacccacttgaaatgtgtcacacacaca 522
Query: 323 cacacacacacacacacacacacacacacacacacacacagaggatatttcaggaaaaaa 382
|||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 523 cacacacacacacacacacacacacacaca----------gaggatatttcaggaaaaaa 572
Query: 383 ctattaatttgaactcttaagttcaagttttttttttaagatt---tatttattt-attt 438
|||||||||||||||||||||||||||||||||||| || || ||||||||| ||||
Sbjct: 573 ctattaatttgaactcttaagttcaagttttttttt-aa--ttgggtatttatttgattt 629
Query: 439 a 439
|
Sbjct: 630 a 630
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space: 472656
Effective search space used: 472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no524_m14.g1 MSMg01no524_m14.g1 CHROMAT_FILE:
MSMg01no524_m14.g1 PHD_FILE: MSMg01no524_m14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:09 2005
(323 letters)
>mm_chr14_117729819_117730541
Length = 723
Score = 586 bits (303), Expect = e-172
Identities = 318/323 (98%)
Strand = Plus / Minus
Query: 1 ggatctggactctagcgatattacatactgtttcccaaatccctgactcctcttttgtat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ggatctggactctagcgatattacatactgtttcccaaatccctgactcctcttttgtat 464
Query: 61 gctgtgcattgttttcctttgatgactaaattactggccctaatctcttgtcttgtaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gctgtgcattgttttcctttgatgactaaattactggccctaatctcttgtcttgtaaga 404
Query: 121 tttgtgcctaaggaaggctgcaaaagccaggtgccaaagtgggcttcaataatcccactc 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 403 tttgtgcctaaggaaggctgcaaaagtcaggtgccaaagtgggcttcaataatcccactc 344
Query: 181 taaggggagatcaaggataagcaggctaacacagcaagcggggttaaccgaacaacttca 240
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 343 taacgggagatcaaggataagcaggctaacacagcaagcggggttaactgaacaacttca 284
Query: 241 gtgctcttccgtcttacaggatgatgagctggaattcctaagggccagaaacataagaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gtgctcttccgtcttacaggatgatgagctggaattcctaagggccagaaacataagaag 224
Query: 301 gagccttacagcaagatagtaga 323
|| ||||| ||||||||||||||
Sbjct: 223 gatccttatagcaagatagtaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space: 224196
Effective search space used: 224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
