BAC Information

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BAC

Clone NameMSMg01-524M23
Chromosome14 (Build37)
Map Location 84,397,509 - 84,398,056
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776
Downstream geneLOC100043280, LOC100043285, Pcdh17, 9630013A20Rik, LOC629794
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524M23.T7 (MSMg01no524_m23.b1)MSMg01-524M23.TJ (MSMg01no524_m23.g1)
ACCAG594799AG594800
length776768
length of high quality
(start - end)
624 (45 - 668)548 (74 - 621)
definitionCHROMAT_FILE: MSMg01no524_m23.b1 PHD_FILE: MSMg01no524_m23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:11 2005CHROMAT_FILE: MSMg01no524_m23.g1 PHD_FILE: MSMg01no524_m23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTGAACTTGAGTCTGTTTTCTTGCACATATAACATCTACCTCATG
TTCACCTATAATTTCAGCTCCAGGGGACCTGCCATGCTTTTCTGGCTGGA
CTAGAAAATATCATACTGAGGTAACCCAATCACAAAAGAACACACATGGT
ATGCACTCACTGATAAGTGGATATTAGTCCAGAAGCTCGGAAAACCAAAG
ATGCAATTCATAAAACACATGAAACTCAAGAAGAAGGAAGACCAAAGTGT
GGATTCTTCCATTCATCGTAGAAGGGAACAAAATACCCATGGAAGGAGTT
ACAGAGAAAAAGTGTGGAGCAGAGACTGAAGAAATGACCATCCAGAGTCT
ACCCCACCTGGGGATCCACCCCATATAAAACCACCAAACCCAGCCACTAC
TGTGGATACCAACAAAAGCTTGCTGAGAGGAACCTGATATAGCTGTCTAC
TGAGAGGCTTTGTCATTGCCTGACAAATATCCATCTGATTGAGCACAGGG
TCCCCAATGAAGGAGCTAGAGAAAGTACCCAAGGGGATGAAGGTGTTTGC
AGTCCTATAGGAGGAAAAACAATATGAACTAACCCATACCCCAAGAGCTC
CCAGGGACTAAACCACCAACCAAAGAAAACACATAGTGGGACTCATGGCT
CTAGCTCCATATGTAGGAGAGGATGGCCTATTTGGTCATCAATAAAAGTA
GAGGACCTTGTGTCTGTGTAGGTTCN
CAATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATTAACCAATCTGCCTGTTTCCTTAA
TCCACTTTCTCTTCTGACTTCCCCTATTTTTTTATCCTTGGAGGGAAACC
AAAAATATTCATACCATGGGACTCTTACCTTAACACATTTTACATGGTCT
CTTAGAAACTTCTGATTTTGTAGTCAGGACATATACTCATAGAAACTTAT
TTCTAAAACACTGAAACTTTTCTAGTGATTTACATAAATAGTAGTTGCTC
AGTTGAAATTCTCACACAGCAAAAATATAAAAGAAGCATTGTGGCAAATA
TATTTAAATGATTTTGAATTTTTAAAATCAGAGGGAGAAAGTGTTTCAGT
TATTAAGTGAAACTTTTTTTTTCTCTCAGAAAAAAAATATATGTGAGAAA
GAAAAGAGTTATCTTTCACATCCAGGTTTTAGAATCTTTGTTTTGGTGTT
GACAAAAAGAGAAATATAGATTTTGGTCCTTAATGATGAGCAGTACTTAA
CAAGTGTTCATGGCCCTCAAGGAGGTCAGACAAAGGAGAGCATCAGCTTC
TCTGAGACTAAAGTAACAGGTGCTAAGAAGCCTTGAATTAACCCCAGGTC
CTCTAATAAGGATAAAGTGCTCTTAACTGCTGAAGCATCTCTCTAGCCCA
GAAGAAGACCTTTGGTACCAAATTCTCAGGGTGGTTTATTTTTTTTTAGC
AAAGATGTTCATGTACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_m23.g1 MSMg01no524_m23.g1 CHROMAT_FILE:
MSMg01no524_m23.g1 PHD_FILE: MSMg01no524_m23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:11 2005
         (548 letters)



>mm_chr14_84397309_84398256
          Length = 948

 Score = 1002 bits (518), Expect = 0.0
 Identities = 541/550 (98%), Gaps = 4/550 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattaaccaatctgcctgtttccttaatccactttctcttctgacttcccctattttttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 cattaaccaatctgcctgtttccttaatccactttctcttctgacttcccctattttttt 689

                                                                       
Query: 61  atccttggagggaaaccaaaaatattcataccatgggactcttaccttaacacattttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 atccttggagggaaaccaaaaatattcataccatgggactcttaccttaacacattttac 629

                                                                       
Query: 121 atggtctcttagaaacttctgattttgtagtcaggacatatactcatagaaacttatttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 atggtctcttagaaacttctgattttgtagtcaggacatatactcatagaaacttatttc 569

                                                                       
Query: 181 taaaacactgaaacttttctagtgatttacataaatagtagttgctcagttgaaattctc 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 568 taaaacactgaaacttttctagtgatttacataaataatagttgctcagttgaaattctc 509

                                                                       
Query: 241 acacagcaaaaatataaaagaagcattgtggcaaatatatttaaatgattttgaattttt 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 508 acacagcaaaaatataaaagaagcattgtggcaaatatattaaaatgattttgaattttt 449

                                                                       
Query: 301 aaaatcagagggagaaagtgtttcagttattaagtgaaactttttttttctctcag--aa 358
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||  ||
Sbjct: 448 aaaatcagagggagaaagtgtttcagttattaagtgaaac--tttttttctctcagaaaa 391

                                                                       
Query: 359 aaaaaatatatgtgagaaagaaaagagttatctttcacatccaggttttagaatctttgt 418
           |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 390 aaaaaatatatgtgagaaagaaaaaagttatctttcacatccagcttttagaatctttgt 331

                                                                       
Query: 419 tttggtgttgacaaaaagagaaatatagattttggtccttaatgatgagcagtacttaac 478
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 330 tttggtgttgacaaaaagagaaatatagattttgatccttaatgatgagcagtacttaac 271

                                                                       
Query: 479 aagtgttcatggccctcaaggaggtcagacaaaggagagcatcagcttctctgagactaa 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aagtgttcatggccctcaaggaggtcagacaaaggagagcatcagcttctctgagactaa 211

                     
Query: 539 agtaacaggt 548
           ||||||||||
Sbjct: 210 agtaacaggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)