Query= MSMg01no525_j20.b1 MSMg01no525_j20.b1 CHROMAT_FILE:
MSMg01no525_j20.b1 PHD_FILE: MSMg01no525_j20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:18 2005
(642 letters)
>mm_chr14_115242855_115243897
Length = 1043
Score = 1193 bits (617), Expect = 0.0
Identities = 631/636 (99%), Gaps = 1/636 (0%)
Strand = Plus / Plus
Query: 5 gaattccaaattgtattatatttaaatataaataaccaacataaatgagaaaataatcct 64
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccgaattggattatatttaaatataaataaccaacataaatgagaaaataatcct 264
Query: 65 taaaaaacgagggaattttgagcttgctacaggtagcatccaaaagttaagagttaaata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taaaaaacgagggaattttgagcttgctacaggtagcatccaaaagttaagagttaaata 324
Query: 125 tgcccagagtccagtgtgatacagcaccacatgtggacattttagatttttgtgagaact 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgcccagagtccagtgtgatacagcaccacatgtggacattttagatttttgtgagaact 384
Query: 185 tctggagctaattgatacatgactatgaacatataaaggttataaataagacttagagaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctggagctaattgatacatgactatgaacatataaaggttataaataagacttagagaa 444
Query: 245 tcccatggatgccataaaacagctcagtgagagttctgccaagtgtttctgctaattata 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcccatggatgccataaaacagctcagtgagagttctgccaagtgtttctgctaattata 504
Query: 305 caatcataaccaattaaaaaaa-tactccctaaaattttttcagtaatattattttctaa 363
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 505 caatcataaccaattaaaaaaaatactccctaaaattttttcagtaatattattttctaa 564
Query: 364 ggatttatttttcgttaacttgtgtgtgtgcttgcacacatgtgtgatgcatatctgtgt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggatttatttttcgttaacttgtgtgtgtgcttgcacacatgtgtgatgcatatctgtgt 624
Query: 424 gcatgtgagtgtaaatgactgcagagaacagaagagggtttatatcctaaggaactggag 483
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 625 gcatgtgagtgtaaatgactgcagagaacagaagagggtttatatcccaaggaactggag 684
Query: 484 ttacagactgttgtgagctgccctcgaggttctgggaaccaagctgggatcatctganaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 685 ttacagactgttgtgagctgccctcgaggttctgggaaccaagctgggatcatctgaaaa 744
Query: 544 aacagtacttactttaaagataaaccatttctccagctttaaaggatataatttttattt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aacagtacttactttaaagataaaccatttctccagctttaaaggatataatttttattt 804
Query: 604 aacaaatattatttcatccaggaaactttaaaaaaa 639
||||||||||||||||||||||||||||||||||||
Sbjct: 805 aacaaatattatttcatccaggaaactttaaaaaaa 840
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1043
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1033
Effective search space: 652856
Effective search space used: 652856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no525_j20.g1 MSMg01no525_j20.g1 CHROMAT_FILE:
MSMg01no525_j20.g1 PHD_FILE: MSMg01no525_j20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:18 2005
(600 letters)
>mm_chr14_115420446_115421446
Length = 1001
Score = 1062 bits (549), Expect = 0.0
Identities = 591/611 (96%), Gaps = 12/611 (1%)
Strand = Plus / Minus
Query: 1 ttccactagtagatgaaacagtgcgactcgtcctgccccatgtgactttcgcttactaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 951 ttccactagtagatgaaacagtgcgactcgtcctgccccatgtgactttcgcttactaca 892
Query: 61 aaaggctttgaattgtccacactttaggtttttggttttgtgccatggctttttatgaaa 120
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 891 aaaggctttgaattgtccacactttaggtttttggttttgtgccacggcattttatgaaa 832
Query: 121 ttgtgtccgtcacggggtaag---------actcatgttggagatgtgtggatgaaagtg 171
|||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 831 ttgtgtccatcacggggtaagatattcaacactcatgttggagatgtgtggatgaaagtg 772
Query: 172 aaaacttgaattcttccaatttcaaaggaaaaatacaaacacgttcatatttaaggtttg 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 aaaacttgaattcttccaatttcaaaggaaaaatacaaacacgttcatatttaaggtttg 712
Query: 232 tttggggccagttttaagactgagggatgaaccttgggaaggtgaagaataaggtgacca 291
|||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 711 tttgaggccagttttaagattgagggatgaaccttggggaggtgaagaataaggtgacca 652
Query: 292 ttcaaaaggtatggtacaggctatttcaaattcttcatacccaccctgacacaggtgtgc 351
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 651 ttcaaaaggtatggtacaggctatttcaaattctccatacccaccctgacacaggtgtgc 592
Query: 352 atgtcaaattttcaactttatcatgtctctttttgagtaagatcttcttaagctatactg 411
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 atgtcaa-ttttcaactttatcatgtctctttttgagtaagatcttcttaagctatactg 533
Query: 412 atatgtattgccgtcttctgtagtctaatctgattctgattcatttagataaattacatt 471
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 532 atatgtattgccgtcttctgtagtctaatctgattctgatacatttagataaattacatt 473
Query: 472 agaattagtttctctctgggtttactctgaacatcaacacattcacttttacatttgatt 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 agaattagtttctctctgggtttactctgaacatcaacacattcacttttacatttgatt 413
Query: 532 attggttgggaaaaaaataa--gaagctggtgaacagatggtgaaaatcaatcaaaaacg 589
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 412 attggttgggaaaaaaataaaagaagctggtgaacagatggtgaaaatcaatcaaaaacg 353
Query: 590 gctgccacttt 600
|||||||||||
Sbjct: 352 gctgccacttt 342
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1001
Length adjustment: 10
Effective length of query: 590
Effective length of database: 991
Effective search space: 584690
Effective search space used: 584690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
