Query= MSMg01no526_a10.b1 MSMg01no526_a10.b1 CHROMAT_FILE:
MSMg01no526_a10.b1 PHD_FILE: MSMg01no526_a10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:50 2005
(573 letters)
>mm_chr14_82291021_82291992
Length = 972
Score = 1087 bits (562), Expect = 0.0
Identities = 568/570 (99%), Gaps = 1/570 (0%)
Strand = Plus / Plus
Query: 4 ggaattcagtaaaaatcttctgtaccaagaaatgttttactgctagatttacatatttgt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagtaaaaatcttctgtaccaagaaatgttttactgctagatttacatatttgt 263
Query: 64 gataagtcaaattcgtgaggtcaaaaggatttgagtccctagtactacatacaaactctg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gataagtcaaattcgtgaggtcaaaaggatttgagtccctagtactacatacaaactctg 323
Query: 124 ttatatttgatagaaaaagacttacatttaatatttcttacaatagtaagtcaatcaaac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttatatttgatagaaaaagacttacatttaatatttcttacaatagtaagtcaatcaaac 383
Query: 184 acatgtaatggacccctgaacacacacaaaagtatgagtccataaaagtgaaagtattga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acatgtaatggacccctgaacacacacaaaagtatgagtccataaaagtgaaagtattga 443
Query: 244 gaataattaaaatacagaaagaaaaaataaattgtaagaggttgtgacattttttcagta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaataattaaaatacagaaagaaaaaataaattgtaagaggttgtgacattttttcagta 503
Query: 304 ttgtgctgttcttcaagaaaccaggatgattggtgcttttgatttttacaaagagaataa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttgtgctgttcttcaagaaaccaggatgattggtgcttttgatttttacaaagagaataa 563
Query: 364 taaatgcacatgcaaaatatggaagtttcttaagtaaaaattacaaaaaaatttacattt 423
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 564 taaatgcacatgcaaaatatggaagtttcttaagtaaaaattacaaaaaa-tttacattt 622
Query: 424 caaatttcatcagtagttattgcctggatatgtcttataaaaaatgaatggctctatgtc 483
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 623 caaatttcatcagtagttattgcctgggtatgtcttataaaaaatgaatggctctatgtc 682
Query: 484 tccttttagaacaaaatatgctcacattttttctacaatctgaaactacaggaaataact 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tccttttagaacaaaatatgctcacattttttctacaatctgaaactacaggaaataact 742
Query: 544 ttttttaaatgcaacacttgtcacaatgta 573
||||||||||||||||||||||||||||||
Sbjct: 743 ttttttaaatgcaacacttgtcacaatgta 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 972
Length adjustment: 10
Effective length of query: 563
Effective length of database: 962
Effective search space: 541606
Effective search space used: 541606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no526_a10.g1 MSMg01no526_a10.g1 CHROMAT_FILE:
MSMg01no526_a10.g1 PHD_FILE: MSMg01no526_a10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:50 2005
(601 letters)
>mm_chr14_82430674_82431675
Length = 1002
Score = 1044 bits (540), Expect = 0.0
Identities = 591/618 (95%), Gaps = 18/618 (2%)
Strand = Plus / Minus
Query: 1 aattcccagcaaccacatggtggctcacaaccatctgcaatgggatctgatgcctttttt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 709 aattcccagcaaccacatggtggctcacaaccatctgcaatgggatctgatgccttctct 650
Query: 61 tggtatgtgtgaagagagcaacatatttactaatatacataaaataaaataaatctttaa 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tggtgtgtgtgaagagagcaacatatttactaatatacataaaataaaataaatctttaa 590
Query: 121 aaaaaggaaaagaacaacatattcagtaataactattgtccttgcaaactcaaattggcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 aaaaaggaaaagaacaacatattcagtaataactattgtccttgcaaactcaaattggcc 530
Query: 181 tcataggagatattagtttactataaactctcctcataattccttctaggtgttactttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tcataggagatattagtttactataaactctcctcataattccttctaggtgttactttt 470
Query: 241 tattagttgttatcattttttgtgaacaaagacactttgaaatggcagttgtttacagtc 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 469 tattagttgttatcattttttgtgaacaaagacactttgaaatggtagttgtttacagtc 410
Query: 301 aatagttttatggctttgtaaatatgcagtgtttcttattaacttatttttcttattggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aatagttttatggctttgtaaatatgcagtgtttcttattaacttatttttcttattggc 350
Query: 361 tt-aagacctcttcacatggat----------------atatatatatatatatatatat 403
|| ||||||||||||||| || ||||||||||||||||||||||
Sbjct: 349 ttaaagacctcttcacatacatatatatatatacatacatatatatatatatatatatat 290
Query: 404 atatatatagtaaaatttttatagctttttattgtttttattccaaatgaaatgtgtaaa 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 atatatatagtaaaatttttatagctttttattgtttttattccaaatgaaatgtgtaaa 230
Query: 464 aacaagggagtaatgtttttattttcttttttgaattgaaaattcttctctcatatagta 523
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 229 aacaagggagtaatgcttttattttcttttttgaattgaaaattcttctctcatatagca 170
Query: 524 catcctcaccatggtttcccctccctctatttcagccagctacctctgtacctcccttct 583
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 catcctgaccatggtttcccctccctctatttcagccagctacctctgtacctcccttct 110
Query: 584 tct-cacaatctactctc 600
||| ||||||||||||||
Sbjct: 109 tctccacaatctactctc 92
Score = 66.5 bits (34), Expect = 6e-15
Identities = 37/38 (97%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 380 atatatatatatatatatatatatatatatatagtaaa 417
||||||||||||||||||||||||||||||||| ||||
Sbjct: 838 atatatatatatatatatatatatatatatata-taaa 874
Score = 64.5 bits (33), Expect = 2e-14
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 380 atatatatatatatatatatatatatatatata 412
|||||||||||||||||||||||||||||||||
Sbjct: 832 atatatatatatatatatatatatatatatata 864
Score = 64.5 bits (33), Expect = 2e-14
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 380 atatatatatatatatatatatatatatatata 412
|||||||||||||||||||||||||||||||||
Sbjct: 865 atatatatatatatatatatatatatatatata 833
Score = 64.5 bits (33), Expect = 2e-14
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 380 atatatatatatatatatatatatatatatata 412
|||||||||||||||||||||||||||||||||
Sbjct: 834 atatatatatatatatatatatatatatatata 866
Score = 64.5 bits (33), Expect = 2e-14
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 380 atatatatatatatatatatatatatatatata 412
|||||||||||||||||||||||||||||||||
Sbjct: 867 atatatatatatatatatatatatatatatata 835
Score = 64.5 bits (33), Expect = 2e-14
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 380 atatatatatatatatatatatatatatatata 412
|||||||||||||||||||||||||||||||||
Sbjct: 836 atatatatatatatatatatatatatatatata 868
Score = 64.5 bits (33), Expect = 2e-14
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 380 atatatatatatatatatatatatatatatata 412
|||||||||||||||||||||||||||||||||
Sbjct: 869 atatatatatatatatatatatatatatatata 837
Score = 64.5 bits (33), Expect = 2e-14
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 380 atatatatatatatatatatatatatatatata 412
|||||||||||||||||||||||||||||||||
Sbjct: 871 atatatatatatatatatatatatatatatata 839
Score = 62.6 bits (32), Expect = 8e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 380 atatatatatatatatatatatatatatatat 411
||||||||||||||||||||||||||||||||
Sbjct: 863 atatatatatatatatatatatatatatatat 832
Score = 62.6 bits (32), Expect = 8e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 381 tatatatatatatatatatatatatatatata 412
||||||||||||||||||||||||||||||||
Sbjct: 872 tatatatatatatatatatatatatatatata 841
Score = 60.7 bits (31), Expect = 3e-13
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 381 tatatatatatatatatatatatatatatat 411
|||||||||||||||||||||||||||||||
Sbjct: 281 tatatatatatatatatatatatatatatat 311
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 383 tatatatatatatatatatatatatatata 412
||||||||||||||||||||||||||||||
Sbjct: 281 tatatatatatatatatatatatatatata 310
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 380 atatatatatatatatatatatatatatat 409
||||||||||||||||||||||||||||||
Sbjct: 282 atatatatatatatatatatatatatatat 311
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 104
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 15
Length of query: 601
Length of database: 1002
Length adjustment: 10
Effective length of query: 591
Effective length of database: 992
Effective search space: 586272
Effective search space used: 586272
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
