BAC Information

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BAC

Clone NameMSMg01-526A18
Chromosome14 (Build37)
Map Location 28,673,692 - 28,774,711
singlet/doubletdoublet
Overlap geneErc2
Upstream geneDnahc7c, Asb14, Appl1, Hesx1, Il17rd, LOC665333, Arhgef3, LOC100040147, Ccdc66, LOC665370
Downstream geneLOC100040206, Wnt5a, LOC100040218, Cacna2d3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526A18.T7 (MSMg01no526_a18.b1)MSMg01-526A18.TJ (MSMg01no526_a18.g1)
ACCAG595736AG595737
length722717
length of high quality
(start - end)		683 (40 - 722)557 (71 - 627)
definitionCHROMAT_FILE: MSMg01no526_a18.b1 PHD_FILE: MSMg01no526_a18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:51 2005CHROMAT_FILE: MSMg01no526_a18.g1 PHD_FILE: MSMg01no526_a18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,774,033 - 28,774,711)(28,673,692 - 28,674,248)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
CCCACCAACCCCATGTCCCTGTAGGGATTGAAGGAAAGGCATGATACCTT
AAACCATTCAAAAACAGCTACTACTATAACTTCTGGATTTGATAAGATGC
AGGCATCTTAAAACTAGATTTTTACACATACTGTAAAGAACTAGTCCATG
CAATTTACATGAATCTAGGGAAAATGAAAAGTCCTTTTTCTCCTTTGCTC
TTTCTGAACATAGGACCCCAAATTCTATTCCAGTTCTTCCACTCCATATT
GAAAGAGGTTTAAAAAGAAAAAAGAAAAGAAGACTCAAGGACAAAACTCA
AAGGAAGCTGAGTCTTTGGGAGTGAATACGTGAGTTAAATATCATGGGCT
TGGGAGGAAAAAAAATTGGGAATGAAAATAAAACCCATGGCACTGAGTTC
AATAAATAAATAAGCAAGCACTCAAGGAAATAGCTCTTCACAAATAGACG
GCAGTGCACATACATGTCCAACCAACTCACAGCGATGACCGTAAACCCAA
CCATAGAACACAAGCATGAATAAAATATGATACAAGAAATCAAGATAATA
ACAGTACCTCCTTCATCCAGTTGTTTTGTGGATTAAATAATAACAGAAGA
AAGAAACTTAGCACAGTGCCTGGCACCCAGAAACACTCAATAAATATTTG
CTATTGTGTTTATATTTTATTA

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGTGAAGTATGACTACCCTTCCAAGCATCA
GCTCAGTGACTCATTACTGACACAAAGGAGCTTGAGGAGAGTGAGAAACT
TGACCACCTGGTTTCCACGGACGGTCCCTTCCGGTTCTGTGAGCCCTTAC
ACTGTAAGTTATAGATGAGTGTTTGAATGACAGTCTCTAGCCAAAGAAGG
ACCATGTCCTTTCTGTATAAATGTTATTGTCACCACCTCCTTCCCTGTTT
CCTCCTATGGTCTAAAGCGTGGAGCATGTGTCTAACCAGGGACATTATCT
GTTTTGGAACTGCCCTACACTCTGTGATCTGCTACCATCTGGACTGTGGG
GGTGTGCAGGGAACACTCTGTTGATTCATTTGCCACTCCCTTCTGGCATC
TCTAAAATGGGCCTCTGGCTAGAGCTGGTGAGCAGCCAGGCCCTCCCTCT
CTTTCTCATACCTTTTCAAGTACTGGAGAAAGAAGAGGCCATGAGAGAAA
GCTGGTAAAGATACAGACAGGTGGCATGAACATAGAGCTGCCTTAGAGAT
GACTGGGCAATTTGGGATCTATGTTTTAGAATGTGTGCTGCTAAGTGTGA
TATGAAGAAAGTGCTCTCTGATGGTACTTGTGGAGTCCTGGGATGCCAAG
AAGTGCCCTAGGAGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_a18.b1 MSMg01no526_a18.b1 CHROMAT_FILE:
MSMg01no526_a18.b1 PHD_FILE: MSMg01no526_a18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:51 2005
         (683 letters)



>mm_chr14_28773965_28775047
          Length = 1083

 Score = 1305 bits (675), Expect = 0.0
 Identities = 678/679 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccccaccaaccccatgtccctgtagggattgaaggaaaggcatgataccttaaa 64
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 747 gaattcccccaccaaccccatgttcctgtagggattgaaggaaaggcatgataccttaaa 688

                                                                       
Query: 65  ccattcaaaaacagctactactataacttctggatttgataagatgcaggcatcttaaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ccattcaaaaacagctactactataacttctggatttgataagatgcaggcatcttaaaa 628

                                                                       
Query: 125 ctagatttttacacatactgtaaagaactagtccatgcaatttacatgaatctagggaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ctagatttttacacatactgtaaagaactagtccatgcaatttacatgaatctagggaaa 568

                                                                       
Query: 185 atgaaaagtcctttttctcctttgctctttctgaacataggaccccaaattctattccag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 atgaaaagtcctttttctcctttgctctttctgaacataggaccccaaattctattccag 508

                                                                       
Query: 245 ttcttccactccatattgaaagaggtttaaaaagaaaaaagaaaagaagactcaaggaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ttcttccactccatattgaaagaggtttaaaaagaaaaaagaaaagaagactcaaggaca 448

                                                                       
Query: 305 aaactcaaaggaagctgagtctttgggagtgaatacgtgagttaaatatcatgggcttgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aaactcaaaggaagctgagtctttgggagtgaatacgtgagttaaatatcatgggcttgg 388

                                                                       
Query: 365 gaggaaaaaaaattgggaatgaaaataaaacccatggcactgagttcaataaataaataa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gaggaaaaaaaattgggaatgaaaataaaacccatggcactgagttcaataaataaataa 328

                                                                       
Query: 425 gcaagcactcaaggaaatagctcttcacaaatagacggcagtgcacatacatgtccaacc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gcaagcactcaaggaaatagctcttcacaaatagacggcagtgcacatacatgtccaacc 268

                                                                       
Query: 485 aactcacagcgatgaccgtaaacccaaccatagaacacaagcatgaataaaatatgatac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aactcacagcgatgaccgtaaacccaaccatagaacacaagcatgaataaaatatgatac 208

                                                                       
Query: 545 aagaaatcaagataataacagtacctccttcatccagttgttttgtggattaaataataa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 aagaaatcaagataataacagtacctccttcatccagttgttttgtggattaaataataa 148

                                                                       
Query: 605 cagaagaaagaaacttagcacagtgcctggcacccagaaacactcaataaatatttgcta 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 cagaagaaagaaacttagcacagtgcctggcacccagaaacactcaataaatatttgcta 88

                              
Query: 665 ttgtgtttatattttatta 683
           |||||||||||||||||||
Sbjct: 87  ttgtgtttatattttatta 69


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space:   722129
Effective search space used:   722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no526_a18.g1 MSMg01no526_a18.g1 CHROMAT_FILE:
MSMg01no526_a18.g1 PHD_FILE: MSMg01no526_a18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:51 2005
         (557 letters)



>mm_chr14_28673492_28674448
          Length = 957

 Score = 1007 bits (521), Expect = 0.0
 Identities = 548/557 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgaagtatgactacccttccaagcatcagctcagtgactcattactgacacaaaggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgaagtatgactacccttccaagcatcagctcagtgactcattactgacacaaaggag 260

                                                                       
Query: 61  cttgaggagagtgagaaacttgaccacctggtttccacggacggtcccttccggttctgt 120
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 261 cttgaggagagtgagaaacttgaccggctggtttccacggacggtcccttccggttctgt 320

                                                                       
Query: 121 gagcccttacactgtaagttatagatgagtgtttgaatgacagtctctagccaaagaagg 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagcccttacactataagttatagatgagtgtttgaatgacagtctctagccaaagaagg 380

                                                                       
Query: 181 accatgtcctttctgtataaatgttattgtcaccacctccttccctgtttcctcctatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accatgtcctttctgtataaatgttattgtcaccacctccttccctgtttcctcctatgg 440

                                                                       
Query: 241 tctaaagcgtggagcatgtgtctaaccagggacattatctgttttggaactgccctacac 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 tctaaagcgtggagcatgtgtctaaccagggacattatctgttttggaactgccctacgc 500

                                                                       
Query: 301 tctgtgatctgctaccatctggactgtgggggtgtgcagggaacactctgttgattcatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgtgatctgctaccatctggactgtgggggtgtgcagggaacactctgttgattcatt 560

                                                                       
Query: 361 tgccactcccttctggcatctctaaaatgggcctctggctagagctggtgagcagccagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgccactcccttctggcatctctaaaatgggcctctggctagagctggtgagcagccagg 620

                                                                       
Query: 421 ccctccctctctttctcataccttttcaagtactggagaaagaagaggccatgagagaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccctccctctctttctcataccttttcaagtactggagaaagaagaggccatgagagaaa 680

                                                                       
Query: 481 gctggtaaagatacagacaggtggcatgaacatagagctgccttagagatgactgggcaa 540
           |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 681 gctggtaaagatgcagacaggtggcatgaacatggagctgccttagagatgactgggaaa 740

                            
Query: 541 tttgggatctatgtttt 557
            |||| |||||||||||
Sbjct: 741 cttggaatctatgtttt 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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