BAC Information

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BAC

Clone NameMSMg01-526C15
Chromosome14 (Build37)
Map Location 64,492,598 - 64,670,215
singlet/doubletdoublet
Overlap gene2610028A01Rik, Sox7, 4930578I06Rik, Rp1l1
Upstream geneWdfy2, LOC668268, EG432867, EG654465, EG654458, 2410125J01Rik, Defb42, LOC100042978, Ctsb, Fdft1, Neil2, Gata4, LOC100042988, LOC432868, Blk, LOC668293, BC065085, Tdh, Mtmr9, Xkr6, LOC668306
Downstream gene4933401F05Rik, 1700007N14Rik, 1700049K14Rik, Msra, Kif13b, Hmbox1, LOC100043657, D14Ertd231e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526C15.T7 (MSMg01no526_c15.b1)MSMg01-526C15.TJ (MSMg01no526_c15.g1)
ACCAG595824AG595825
length718716
length of high quality
(start - end)		499 (67 - 565)603 (68 - 670)
definitionCHROMAT_FILE: MSMg01no526_c15.b1 PHD_FILE: MSMg01no526_c15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:00 2005CHROMAT_FILE: MSMg01no526_c15.g1 PHD_FILE: MSMg01no526_c15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,669,717 - 64,670,215)(64,492,598 - 64,493,200)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AGGCAGGTTCGCTTAGCCAATCTGGAGGACTTTCCCCAACCTCAGTACTT
GCAAAGGTAGTACAGGATTCCTCACAGTCCTCTAGAAGGTCACTCGGAAA
AGGTCTCTCTCTGTGTATGCCCCCTTCAGGGCCTTGGAGCCCCTGTGTGC
AGGGCCATGCTTCAGTTCATGGCACGGTGAATGGGGATTGTTCCAGGAGA
TGGTTTGCACTGTACTCTTCTGAATTGTTTGGGTCTGTGCCAGCTCCTTC
CCCAAGCAATGCCCTCTTGACTATTGTGTCAATTATGGCTGATGGTTATC
TTGCTTGTTTATCCAGTTGCTGTATAGATTGACTCTCTGAATGTCAGGGT
TTGCCTGTTTCCATAACAGGAAGCCTCTTGCTGTCTTACTGTATTAAGAA
CCTCCAGTCAACACAATAGAATCTCAACAAAACCCTAAACACTCTGTTTG
CCCGGGAGCCTCATTGAATCCAGCTCTTATTGTTTCATTTAGAGTTGGAA
TCCTGTATTTACAGTCATAANGGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTTTTACTGATTCATAAAACATTACTGATCTGTTATCTTTTTTA
CTTATTTTTGTCATATGGGTGTCTCTCGAATGTGTTTTGTCGTTTGGGTT
GTCTCTGTTGGGCGCTGT

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTTTGGATGACATGCAGCCTCCCCCACTCCCT
CCCCTCTAAATGCATGTAGTCTTTTGATTGTCCTTTAGAACCTGACTGCA
TACCTGACTCACCTGAAGCATTTGCTGACGTTAGGATGAACCTCCCTAAG
TTGCTTTAATCTGCTGGATACTGGCTGTGTCTGCTTTCTTTTCCTGGTTC
AGCCACTCCCTTGCTGGTGACCCTGTCAGACTGCTTGGTGTGTTATACCT
TCATTTCTCTCTCACAGTGAGGTTTGCATATTTATCAGCCCTGCTCATGA
AGAAAGGAGGCCTTACTGTGCAGAGAAGAAAGAGCTGAAGGTGCATTGTG
CTAAGGGAGAGGAGGTGTCAGGAAATAGAGGACCCAAAGGCTGGGAATAA
GAAAGGAAGAGGAAAAAGGAGTGGAAATCTAGGTAGTACAGGAAACAGCA
GATAACCACTGTCTGCACCATCCAGTGCAAGTTGGTGTTACAGTTCTTTT
AATTTCCTAAAAGCTGTTTCTTTCAGTTGTTCTTGTCTCTGGGTATGAAT
GACAAACATGAACTGTTGTTATCCTAAAGGAGCCTGTCTGGGTCTGCGGA
AGCTGGCTTCTGGCTGGTGCTCTCCCAGACACTTCCCTAACCATTTCCTT
CCTTTCAACTCTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_c15.b1 MSMg01no526_c15.b1 CHROMAT_FILE:
MSMg01no526_c15.b1 PHD_FILE: MSMg01no526_c15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:00 2005
         (499 letters)



>mm_chr14_64669517_64670415
          Length = 899

 Score =  965 bits (499), Expect = 0.0
 Identities = 499/499 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaatctggaggactttccccaacctcagtacttgcaaaggtagtacaggattcctcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ccaatctggaggactttccccaacctcagtacttgcaaaggtagtacaggattcctcaca 640

                                                                       
Query: 61  gtcctctagaaggtcactcggaaaaggtctctctctgtgtatgcccccttcagggccttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 gtcctctagaaggtcactcggaaaaggtctctctctgtgtatgcccccttcagggccttg 580

                                                                       
Query: 121 gagcccctgtgtgcagggccatgcttcagttcatggcacggtgaatggggattgttccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gagcccctgtgtgcagggccatgcttcagttcatggcacggtgaatggggattgttccag 520

                                                                       
Query: 181 gagatggtttgcactgtactcttctgaattgtttgggtctgtgccagctccttccccaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gagatggtttgcactgtactcttctgaattgtttgggtctgtgccagctccttccccaag 460

                                                                       
Query: 241 caatgccctcttgactattgtgtcaattatggctgatggttatcttgcttgtttatccag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 caatgccctcttgactattgtgtcaattatggctgatggttatcttgcttgtttatccag 400

                                                                       
Query: 301 ttgctgtatagattgactctctgaatgtcagggtttgcctgtttccataacaggaagcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ttgctgtatagattgactctctgaatgtcagggtttgcctgtttccataacaggaagcct 340

                                                                       
Query: 361 cttgctgtcttactgtattaagaacctccagtcaacacaatagaatctcaacaaaaccct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 cttgctgtcttactgtattaagaacctccagtcaacacaatagaatctcaacaaaaccct 280

                                                                       
Query: 421 aaacactctgtttgcccgggagcctcattgaatccagctcttattgtttcatttagagtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aaacactctgtttgcccgggagcctcattgaatccagctcttattgtttcatttagagtt 220

                              
Query: 481 ggaatcctgtatttacagt 499
           |||||||||||||||||||
Sbjct: 219 ggaatcctgtatttacagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no526_c15.g1 MSMg01no526_c15.g1 CHROMAT_FILE:
MSMg01no526_c15.g1 PHD_FILE: MSMg01no526_c15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:00 2005
         (603 letters)



>mm_chr14_64492398_64493400
          Length = 1003

 Score = 1158 bits (599), Expect = 0.0
 Identities = 602/603 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttggatgacatgcagcctcccccactccctcccctctaaatgcatgtagtcttttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttggatgacatgcagcctcccccactccctcccctctaaatgcatgtagtcttttga 260

                                                                       
Query: 61  ttgtcctttagaacctgactgcatacctgactcacctgaagcatttgctgacgttaggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtcctttagaacctgactgcatacctgactcacctgaagcatttgctgacgttaggat 320

                                                                       
Query: 121 gaacctccctaagttgctttaatctgctggatactggctgtgtctgctttcttttcctgg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 gaacctccctaagttgctttaatctgctggatactggctgtgtctgctttctattcctgg 380

                                                                       
Query: 181 ttcagccactcccttgctggtgaccctgtcagactgcttggtgtgttataccttcatttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcagccactcccttgctggtgaccctgtcagactgcttggtgtgttataccttcatttc 440

                                                                       
Query: 241 tctctcacagtgaggtttgcatatttatcagccctgctcatgaagaaaggaggccttact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctctcacagtgaggtttgcatatttatcagccctgctcatgaagaaaggaggccttact 500

                                                                       
Query: 301 gtgcagagaagaaagagctgaaggtgcattgtgctaagggagaggaggtgtcaggaaata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgcagagaagaaagagctgaaggtgcattgtgctaagggagaggaggtgtcaggaaata 560

                                                                       
Query: 361 gaggacccaaaggctgggaataagaaaggaagaggaaaaaggagtggaaatctaggtagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaggacccaaaggctgggaataagaaaggaagaggaaaaaggagtggaaatctaggtagt 620

                                                                       
Query: 421 acaggaaacagcagataaccactgtctgcaccatccagtgcaagttggtgttacagttct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acaggaaacagcagataaccactgtctgcaccatccagtgcaagttggtgttacagttct 680

                                                                       
Query: 481 tttaatttcctaaaagctgtttctttcagttgttcttgtctctgggtatgaatgacaaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttaatttcctaaaagctgtttctttcagttgttcttgtctctgggtatgaatgacaaac 740

                                                                       
Query: 541 atgaactgttgttatcctaaaggagcctgtctgggtctgcggaagctggcttctggctgg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgaactgttgttatcctaaaggagcctgtctgggtctgcggaagctggcttctggctgg 800

              
Query: 601 tgc 603
           |||
Sbjct: 801 tgc 803


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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