Query= MSMg01no526_k13.b1 MSMg01no526_k13.b1 CHROMAT_FILE:
MSMg01no526_k13.b1 PHD_FILE: MSMg01no526_k13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:39 2005
(586 letters)
>mm_chr14_77540453_77541437
Length = 985
Score = 1069 bits (553), Expect = 0.0
Identities = 568/575 (98%), Gaps = 5/575 (0%)
Strand = Plus / Plus
Query: 4 ggaattctcccaccattta--cagctggttctgctatggtgcaggtatggttttaataca 61
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcccacca---agacagctggttctgctatggtgcaggtatggttttaataca 260
Query: 62 tctctcaggggccacgtgctctgagcttggtcccctacgtggcactcttgggaagagtca 121
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 tctctcaggggccacgtgctctgaacttggtcccctacgtggcactcttgggaagagtca 320
Query: 122 aaacctttaacagatgagcaacataacataaaggtctctagaatggattgatactggtct 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacctttaacagatgagcaacataacataaaggtctctagaatggattgatactggtct 380
Query: 182 tgaaaaacggtccaactgatcttgttgaatgaaacatacgagaaaagggtgtatggcatc 241
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaaaatggtccaactgatcttgttgaatgaaacatacgagaaaagggtgtatggcatc 440
Query: 242 catctgctctctgatgtccccatgatgatggcatctgctacagtgtggcctagccaaggg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catctgctctctgatgtccccatgatgatggcatctgctacagtgtggcctagccaaggg 500
Query: 302 ggggtttaacaagagaccaaaccaatggagctggctgatcctgagccttcatctcacaac 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggggtttaacaagagaccaaaccaatggagctggctgatcctgagccttcatctcacaac 560
Query: 362 actgagagctcaacggatgtgttttcttcatgaactccccagctatactacaaaaaagaa 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actgagagctcaacggatgtgttttcttcatgaactccccagctatactacaaaaaagaa 620
Query: 422 acacaaaccaccaacaactaggctgatagaaactgcgcttctaccacgtgggtggtgtag 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acacaaaccaccaacaactaggctgatagaaactgcgcttctaccacgtgggtggtgtag 680
Query: 482 actgaggctttctgcaaaccatgtggcttctcaccaggatcagtgcttctctttcccact 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actgaggctttctgcaaaccatgtggcttctcaccaggatcagtgcttctctttcccact 740
Query: 542 ttctttgaaaagaaaggatattcgggggggggggg 576
|||||||||||||||||||||||||||||||||||
Sbjct: 741 ttctttgaaaagaaaggatattcgggggggggggg 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 985
Length adjustment: 10
Effective length of query: 576
Effective length of database: 975
Effective search space: 561600
Effective search space used: 561600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no526_k13.g1 MSMg01no526_k13.g1 CHROMAT_FILE:
MSMg01no526_k13.g1 PHD_FILE: MSMg01no526_k13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:39 2005
(597 letters)
>mm_chr14_77662284_77663280
Length = 997
Score = 922 bits (477), Expect = 0.0
Identities = 483/485 (99%)
Strand = Plus / Minus
Query: 1 acactcacaaccaaaagaagtccatgctgaagactacataagctatgtgatggtgacggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 acactcacaaccaaaagaagtccatgctgaagactacataagctatgtgatggtgacggt 426
Query: 61 tctgggatagatgactaggcaggccacaggagatttaagagcggaaactatcttatatga 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 425 tctgggatagatgactaggcagaccacaggagatttaagagcggaaactatcttatatga 366
Query: 121 tgccacagtggcaatggtagctgtgtgtcacagatgggtccaaatgtcctgaatatgcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tgccacagtggcaatggtagctgtgtgtcacagatgggtccaaatgtcctgaatatgcaa 306
Query: 181 ccctgggaagggaccctcatctgccctatgagtgtggatgctgtggaggggaaatgggtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccctgggaagggaccctcatctgccctatgagtgtggatgctgtggaggggaaatgggtc 246
Query: 241 aggtaacacattttatacttcatctcctcttgttctggtctgctgtctgttgctgtgaga 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aggtaacacattttatgcttcatctcctcttgttctggtctgctgtctgttgctgtgaga 186
Query: 301 aattccaagaccaaaacagcttggagaagaagggtttccttggcttacctgtccccatgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 aattccaagaccaaaacagcttggagaagaagggtttccttggcttacctgtccccatgg 126
Query: 361 cagtctctcctagagagaagtctagtcaggagaccaagcaagagcctggaggcaggaact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 cagtctctcctagagagaagtctagtcaggagaccaagcaagagcctggaggcaggaact 66
Query: 421 gaagcagagaacatgagggagcgctgtttacagccttgctctccatggtttgctcagcct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 gaagcagagaacatgagggagcgctgtttacagccttgctctccatggtttgctcagcct 6
Query: 481 ccttg 485
|||||
Sbjct: 5 ccttg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
