BAC Information

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BAC

Clone NameMSMg01-526L19
Chromosome14 (Build37)
Map Location 111,275,847 - 111,276,466
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk6, EG668772
Downstream geneEG622052, LOC100043491, LOC100043494, Slitrk5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526L19.T7 (MSMg01no526_l19.b1)MSMg01-526L19.TJ (MSMg01no526_l19.g1)
ACCAG596257AG596258
length738740
length of high quality
(start - end)
680 (33 - 712)620 (67 - 686)
definitionCHROMAT_FILE: MSMg01no526_l19.b1 PHD_FILE: MSMg01no526_l19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:45 2005CHROMAT_FILE: MSMg01no526_l19.g1 PHD_FILE: MSMg01no526_l19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTCCTTT
CATTATAGCGGATTGTTTTAATTATCCTCTTTTTTGGTTTGTTTGTTTTT
TTTTTTCTGATTCTGCACATAATGTTGAATATTCCTCTTTCAAGGTCTGT
GAGAGTTGTGTTAAAAGCTTGATGGGGTTTGTGTTGAATTGCTCACTAAT
TTTCATATAATGGTCATTTTTATTTTATTTCTTCCACTGTAAAATTATGA
GTTTTATAGGAGTTACTTACAGATTCATTATTATAATTATTATTAAATGA
TTAATTTACTTACATCTCAATTGAAGCTTTCCCTTTCTCCTTTCCATCAG
TCCATCCTTGTGACTTCCTCTCCTCCTATCCACTTTTCCTTTCTCCTCAG
AGAAGGAAAAGCCTTTTATGGATATCAACCAGCCTTACCATATCAAGTTG
CAGTAGGATTAGGCACATCTGCCTGGACAATTTAGCCCAGGTACAGAAAA
TTACAGGCCCTGCTCTCGTTGTTAGGGGTCCACATGAAGTTCAAACTGCA
CATTTGTTACATATGTGTGTGGGGAGTGGTCTATTTCATGAATGGTACTT
TAGCTTCTGTGAGACCCTATAAGATCATTAGTTCCTTCTGTAGATTTTCT
TGTGGTCTACTTGACCCCTGTGGCTCTAGTTCAATACTTAGTTGTCCTCT
TACAAAAGTTTTCAGAGCCACTTCTAGGACATGATATG
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTAAATAGAGAAAGATGTAAAACTACAAAGAGTG
TGAGAGAAAATTTAAAAAAATAAAAAAGGCATTGAATGATATTTGAATCA
CATATCCTTGAATGGTTTGTATATGTATTGATAGGATAGGTATAATATCA
GGGTGAGGTAAAATGTTATAAGCGAAGACTCCAGAATAGAATAGTGTGAG
AATATAAACGATGGATTTTCTACCACTGAGTTGTATGGTCTGGAGAGGCA
ATTCTGTTTTGAAAGGCTATTCTGACATCCGAGCTTCTTCCATAAGTTTG
AATTGCATCATCCAAGGCAGGCATTGGCAAAGGAGCTCATAAGCTAAGCA
TAGAAAGCTGCTGCTTATAGAATCAAAGCATCAGTGGACCACAGTGGTGC
GGGTTTCTTTATCCCTTGCCAATGCCTTCCTTTCTGCTACACGGACACAC
TCATTGAATATCTGTGACAAAAGTCCAATGTCCTGCAATGCCGAAATATT
TATCATCTGACTTTTTCAATAAAAGTAATCATATTCCATATATTTGGAAG
AAGTGCCTTTTCATTATGGATAATCCCTAATTTATCTAAAGCACATTACC
ATACTTAATGTTAGATACAATTCAGTTACATTTCACGTAAAGTTAAAATG
TAGTTTACAGAGAGGTAGTATGCTTTCATTATAAACCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_l19.g1 MSMg01no526_l19.g1 CHROMAT_FILE:
MSMg01no526_l19.g1 PHD_FILE: MSMg01no526_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:45 2005
         (620 letters)



>mm_chr14_111275647_111276666
          Length = 1020

 Score = 1168 bits (604), Expect = 0.0
 Identities = 616/620 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaaatagagaaagatgtaaaactacaaagagtgtgagagaaaatttaaaaaaataaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaaatagagaaagatgtaaaactacaaagagtgtgagagaaaatttaaaaaaataaaaa 260

                                                                       
Query: 61  aggcattgaatgatatttgaatcacatatccttgaatggtttgtatatgtattgatagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcattgaatgatatttgaatcacatatccttgaatggtttgtatatgtattgatagga 320

                                                                       
Query: 121 taggtataatatcagggtgaggtaaaatgttataagcgaagactccagaatagaatagtg 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 taggtataagatcagggtgaggtaaaatgttataagcgaagactccagaatagaatagtc 380

                                                                       
Query: 181 tgagaatataaacgatggattttctaccactgagttgtatggtctggagaggcaattctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagaatataaacgatggattttctaccactgagttgtatggtctggagaggcaattctg 440

                                                                       
Query: 241 ttttgaaaggctattctgacatccgagcttcttccataagtttgaattgcatcatccaag 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttgaaaggctattctgacatctgagcttcttccataagtttgaattgcatcatccaag 500

                                                                       
Query: 301 gcaggcattggcaaaggagctcataagctaagcatagaaagctgctgcttatagaatcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaggcattggcaaaggagctcataagctaagcatagaaagctgctgcttatagaatcaa 560

                                                                       
Query: 361 agcatcagtggaccacagtggtgcgggtttctttatcccttgccaatgccttcctttctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcatcagtggaccacagtggtgcgggtttctttatcccttgccaatgccttcctttctg 620

                                                                       
Query: 421 ctacacggacacactcattgaatatctgtgacaaaagtccaatgtcctgcaatgccgaaa 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 ctacacggacacactcattgaatatctgtgacaaaagtccaatgtcctgcaatgcctaaa 680

                                                                       
Query: 481 tatttatcatctgactttttcaataaaagtaatcatattccatatatttggaagaagtgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatttatcatctgactttttcaataaaagtaatcatattccatatatttggaagaagtgc 740

                                                                       
Query: 541 cttttcattatggataatccctaatttatctaaagcacattaccatacttaatgttagat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cttttcattatggataatccctaatttatctaaagcacattaccatacttaatgttagat 800

                               
Query: 601 acaattcagttacatttcac 620
           ||||||||||||||||||||
Sbjct: 801 acaattcagttacatttcac 820


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)