Query= MSMg01no527_f06.b1 MSMg01no527_f06.b1 CHROMAT_FILE:
MSMg01no527_f06.b1 PHD_FILE: MSMg01no527_f06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:32 2005
(685 letters)
>mm_chr14_118341404_118342488
Length = 1085
Score = 1270 bits (657), Expect = 0.0
Identities = 674/681 (98%), Gaps = 3/681 (0%)
Strand = Plus / Minus
Query: 5 gaattcaacattgcaaaccccagagataccttcctgtgccattcaggtattattattatt 64
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 962 gaattcaacattggaaaccccagagataccttcctgtgccattcagg---tattattatt 906
Query: 65 attatttttttgattaaaaagaaaagacagcaaatgatcacattttatgtttgtacctaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 attatttttttgattaaaaagaaaagacagcaaatgatcacattttatgtttgtacctaa 846
Query: 125 tgttctaattatgccttgttgcctgtgatctcatgttccaggcaataatgtagaaagagt 184
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 845 tgttctaattatgccttgttgcctgtgatctcatgttccaggcaataatgtaaaaagagt 786
Query: 185 gccatatgtccttgagaaaacacacaattggaccttgagctaataccaattaacttcaac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 gccatatgtccttgagaaaacacacaattggaccttgagctaataccaattaacttcaac 726
Query: 245 agtcgagagaaaagggacatcatttagtccccagaaattcacacaaaatcaaagggccgc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 agtcgagagaaaagggacatcatttagtccccagaaattcacacaaaatcaaagggccgc 666
Query: 305 tttgcccagtagcctcttaattacgacatcatttgcttttgacgaatgaaaattatgaac 364
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 665 tttgcctagtagcctcttaattacgacatcatttgcttttgacgagtgaaaattatgaac 606
Query: 365 cacttcaaggagtgattttcttattgaattgtcaaattttaaagaagagctcctatgcgc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 cacttcaaggagtgattttcttattgaattgtcaaattttaaagaagagctcctatgcgc 546
Query: 425 caaaggttctagaagattcacaatttaagacttgtctagactccttttaaatccttactg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 caaaggttctagaagattcacaatttaagacttgtctagactccttttaaatccttactg 486
Query: 485 tgacacacactggtgtctggctggacctcttctctcctctcattttctctgagcattgtt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tgacacacactggtgtctggctggacctcttctctcctctcattttctctgagcattgtt 426
Query: 545 atgggtatcctggccatagacaggggcgagtccctcttcttctgcctgacacttacactc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 atgggtatcctggccatagacaggggcgagtccctcttcttctgcctgacacttacactc 366
Query: 605 gaggccccatggctcttgcttttcctgcacattcatgctccatggttggtttttttctct 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gaggccccatggctcttgcttttcctgcacattcatgctccatggttggtttttttctct 306
Query: 665 cccaggtgcactcccttctga 685
|||||||||||||||||||||
Sbjct: 305 cccaggtgcactcccttctga 285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space: 725625
Effective search space used: 725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no527_f06.g1 MSMg01no527_f06.g1 CHROMAT_FILE:
MSMg01no527_f06.g1 PHD_FILE: MSMg01no527_f06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:32 2005
(657 letters)
>mm_chr14_118182907_118183963
Length = 1057
Score = 1216 bits (629), Expect = 0.0
Identities = 650/657 (98%)
Strand = Plus / Plus
Query: 1 agattagagctttgctctcacgaagtcctctggcccagctactttaaagacagccaccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agattagagctttgctctcacgaagtcctctggcccagctactttaaagacagccaccaa 260
Query: 61 cagatggagggccttcgccacataatgaaccaggggaaatttccttatgattcagacaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagatggagggccttcgccacataatgaaccaggggaaatttccttatgattcagacaag 320
Query: 121 gcagtgtatccaaaccactgtggagagttcggggcaggaatgtgccaggctggtataatc 180
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 gcagtgcatccaaaccactgtggagagttcagggcaggaatgtgccaggctggtataatc 380
Query: 181 atgtcatttgcggcctgcttgttcaacagcctgtgtgctggaagctacattaggcatctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtcatttgcggcctgcttgttcaacagcctgtgtgctggaagctacattaggcatctg 440
Query: 241 gggagaagagccatggcgagcatttcatcccctgcccatgaagagcattaccaggcctaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggagaagagccatggcgagcatttcatcccctgcccatgaagagcattaccaggcctaa 500
Query: 301 tccatcagctgaaatctgcctgtctctcccttacagcagagtgagaaaggacatcaaagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccatcagctgaaatctgcctgtctctcccttacagcagagtgagaaaggacatcaaagc 560
Query: 361 acactgccaaagcttccgctctggctcgttcggttcgctgagttgaactcggctgctgtg 420
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acactggcgaagcttccgctctggctcgttcggttcgctgagttgaactcggctgctgtg 620
Query: 421 gaccccacttgtgtcttgactgatagaatatggcagcgcttcagcagagacaaaggaggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaccccacttgtgtcttgactgatagaatatggcagcgcttcagcagagacaaaggaggg 680
Query: 481 tcgagaacgaatgccccgactttagttacttagctcttactgccttgtttgcctcatctg 540
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcgagaatgaatgccccgactttagttacttagctcttactgccttgtttgcctcatctg 740
Query: 541 taaacgaagttaaacctccacttcagagagatgctgaagtttcccatagtggaagaatca 600
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 741 taaacgcagttaaacctccacttcagagagatgctgaagtttcccatagttgaagaatca 800
Query: 601 tgggaccgtggggtggatccctctagaacacctgttagctgggtgaccctgctgtca 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgggaccgtggggtggatccctctagaacacctgttagctgggtgaccctgctgtca 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
