BAC Information

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BAC

Clone NameMSMg01-527K08
Chromosome14 (Build37)
Map Location 113,890,432 - 113,890,575
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043509, Tpm3-rs7, LOC100043510
Downstream geneLOC382947, LOC668791, LOC100043821
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527K08.T7 (MSMg01no527_k08.b1)MSMg01-527K08.TJ (MSMg01no527_k08.g1)
ACCAG596949AG596950
length787913
length of high quality
(start - end)
144 (123 - 266)---
definitionCHROMAT_FILE: MSMg01no527_k08.b1 PHD_FILE: MSMg01no527_k08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:57 2005CHROMAT_FILE: MSMg01no527_k08.g1 PHD_FILE: MSMg01no527_k08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTAAACCTCTAAAATTTGTGTTCGCTAATATACTCACTATTCGGAGAGG
ATCCGCGGAATTCACTAAATATTTTGGTAACAGGACAATTTCTACTATAT
TAATTTTGCTTATCACTATATGGAAAGTATTTCCATTGTCTATGTCTTGT
ACAGTTTTTCATTTACCATGTTTTACATTTTTTAATCTAAAAGTATTTGA
TTCGTGTTTATTCCCCTGTATAGTATTGCATCTATTGTGAAAATAATCTT
TTCTCACTTTTTCCTCATCATATTGCTGAATAATGAGGAATCATTTAAAG
TTGTCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCGTCTCTGTCTGT
TTTGTCTGTACATGTGTCGTGTTATTCCCTATCATTTTAATTGAAAATAT
CATACTTACAAGCTATTTAGGTTTTACTTTATCATTTTTTTCTGCTGTCC
TGTTAACTGTTGTTTTTCCCCTTTTTTTTGTTGAGAAACCCCTCACCAAA
GTTATTTTTCTTCATCCGTATTACACTCTAGTTGCATATTTATTATAATC
CGCCCCACCTACTTTATATTACTCTTTTTCCGTAATTACCCTTAATATAA
TTTCCCCTGCCTTTTTCACTTTTTCGTTTTAACCATTCCTATCTTATCGT
TTCACGACACATAAAAAATACAACCATCTATTATTACACGACTTTTTATT
CCTAACCTTTGTTCTGTTCTTTTTCTCTCCCTTCCTTTTTTTTTCCCACC
TAATTTTAATACACTATATTTTCTATTCCCTCCTTCT
TTTGCTCTCGCGGTATAAGTTATTTTTGCGTAATCTCTCTTTCCAAATTA
CTTTGGGAGAGACGCGTCATTTCTCGGCGGGACATGGGGCCGGCGGGTCT
TCGGCGCGGCCCTCATCTAATGTTCACCGCCGTGTTTATCTTGTACAGCA
TCTACGAGTTGTGTGCCTGTGGGCGTTAGAGCAATCCGTATAACATTAAC
ATTAATAACAAGGGAGGTGCGGAGCGGGCGGGCGTGGCGCGAGGGCGCGC
CCATACGAAAATACCGGTAAAAACGAAATCCAGCAGCCCTCTTGCACCCC
GTTCCCACAAATACCCACCCCACAGTCATTCCACGTGCGTCGGCTATTTC
TGGGCATATGCAATTAATTCCTCCATTTACCCCTGCCCCCTCATGTCCCG
TCTAGCGATTCGGGTGGTGATTTTCCCCGTCCTATACATGACGGTGCTCC
CCCGTCATCGTTACGCTGCTCAACTTTCATCCGCCAAAGACGTCCGCGAC
GGAAAAAAAGAAAGCTACAGAACCGGCGCGACATTGCTCAGAGTATATTG
ACAATATTGACATATTGTCCATGCGCGGGGGCGTAAATACGCCAAATGTG
TATCGTGCGCGGTATTAAGCTGTCGCGCATGGACTCTATGATCATACATT
TTATGCTGTGTCTCTCTCACCCACCCACTTCAACATTAATTTCGTACGGG
ACGCGTTAGAGAAAGATCGGATGGGCGACCGAAACACGCGTGCCCAGGCC
TTGTGCAACGCACCGCTGCAATTCATAAGCCCCACACGGCGTCGTGGAGC
CCTGGATTGCCGGCCGGGCGGAGGAATTTCGGCGCCTTTATACCCCTTAC
TATTTACACGCCCCCTTCACTTTATCATCCCGCTCTCGAAGTCGCACGCT
TAAATCCCCCGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_k08.b1 MSMg01no527_k08.b1 CHROMAT_FILE:
MSMg01no527_k08.b1 PHD_FILE: MSMg01no527_k08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:57 2005
         (144 letters)



>mm_chr14_113890232_113890775
          Length = 544

 Score =  248 bits (128), Expect = 1e-70
 Identities = 140/144 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaagtatttccattgtctatgtcttgtacagtttttcatttaccatgttttacattttt 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaagtattttcattgtctatgtcttgtacagtttttcatttaccatgttttacattttt 260

                                                                       
Query: 61  taatctaaaagtatttgattcgtgtttattcccctgtatagtattgcatctattgtgaaa 120
           ||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||
Sbjct: 261 taatctaaaagtatttgattcgtgtttattctcctgtatagtattgtagctattgtgaaa 320

                                   
Query: 121 ataatcttttctcactttttcctc 144
           ||||||||||||||||||||||||
Sbjct: 321 ataatcttttctcactttttcctc 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 544
Length adjustment: 8
Effective length of query: 136
Effective length of database: 536
Effective search space:    72896
Effective search space used:    72896
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)