BAC Information

Click to search

BAC

Clone NameMSMg01-527M04
Chromosome14 (Build37)
Map Location 54,950,087 - 55,112,908
singlet/doubletdoublet
Overlap geneLOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2
Upstream geneLOC100043319, EG547328, LOC100043308, LOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777, A630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623
Downstream genePrmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527M04.T7 (MSMg01no527_m04.b1)MSMg01-527M04.TJ (MSMg01no527_m04.g1)
ACCAG597037AG597038
length727731
length of high quality
(start - end)		521 (53 - 573)572 (84 - 655)
definitionCHROMAT_FILE: MSMg01no527_m04.b1 PHD_FILE: MSMg01no527_m04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:08 2005CHROMAT_FILE: MSMg01no527_m04.g1 PHD_FILE: MSMg01no527_m04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,950,087 - 54,950,603)(55,112,337 - 55,112,908)
sequence
AAAGAGGCTCAATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCAGTGTGCTTTAAATGGAGCCTCTGAGCTCACTTGGTT
GTCTCTGTCTTGGTGATGGGAGAGCCCAGCAAGCTGGACTTTGCAGAATA
AAACACTCTTTGCATTTACATACTATTTGAGTCTCGGGTGTCATTCTTCT
GCAAATCATGGTCCCTTACATTAACTCACCACTTATCAATCGCTTTCCCC
AGCTACGCCTCGAAACAGCCAACCATGAGCCAGGAAAGGAAACTTAGCAC
CCGCCTCTCCCTTCCCCTTTCCTACCCAAAAGCTACCCTAGCCTGCAAGC
AGTCAATGGATGGGCTCTACGATTCGTCTTTGGAGACCCCTTCTTTTTTT
CTGTCCTTCCTTCTCTCTGAGCTTACAGAGTAAGGGCAACTAATAGAAGA
CAAGACAGGAGAGCCAGTCTCCAACTGCAGAATATTAACAAGCATGGTCT
GAGAATCCCAAACTGGGAGCTCTTGGATGCTGTAACCCAGCACCTCAGAC
ACACACACACACACACACACACACACACACTCAGACACACATTTGACCCA
AAGCTTAGACCAACACTGTCTTTATTCTGAAGGGGAGAGATTGCCTAAAA
CCGAAATTACTATGGTATCCAGCTGGTTTGCATTGAACCTAACAAAGGCT
TCCACCCACCCACTTCTAGAATTCCCT

AATCCCTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAGAGTCAAGTATTC
CAAGAGTAGGTCTGTTGAGGGGCACCGTCCTCTGCTTGCTTGGCACAGCA
GGGGTTATGCTATGCCAGAGTGTGGCTCCAGGCCTAGGAGCCAACCTAAA
GGAGAGGACCTGAATTCAGGGGCAGGGTTCTGTGGAGATCCTCCATTCTT
TACTGATCACTATGGCAACAGAATGCTAAGACTTTATCATGCTAAAAATA
TGGATAATTGCCCTTAGGTTTTAATTTGTCAGCTCTCAGCCTTCTAGGTG
GGGTGATGGTTTTGTGGGATGTTAGCCTCCAGATTTACTTTCTACACTAA
AGTACTAGAGGTTGGCTGGCGACACAGGCAGCCACTGGACTAGGACTTGG
CTAGGTCCTAACTCGTGTCCAGAGCTCTCCCTGCCCCAGCCCTTCCATCC
CTCAAGCCTATCTTACTTTATTCTTTGGGCCTATGGGAAGGGAACAAAAG
AATGATATTCTATTTTTAGGTAGGAGCTGCTGGCTATGGCCCAGTCCCCT
ATAGTTATCGATTTGGCTGCTAATGTATCTTGAGTGGTGCGGGGACTATT
TTTTGTTAGTCATTCTGAGGCTGCGAACCGGACCTCACAGTTGGCTTAGA
CTCTTCTTAACTGTTATACTCACAGACCGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_m04.b1 MSMg01no527_m04.b1 CHROMAT_FILE:
MSMg01no527_m04.b1 PHD_FILE: MSMg01no527_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:08 2005
         (521 letters)



>mm_chr14_54949883_54950803
          Length = 921

 Score = 1000 bits (517), Expect = 0.0
 Identities = 517/517 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagtgtgctttaaatggagcctctgagctcacttggttgtctctgtcttggtga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagtgtgctttaaatggagcctctgagctcacttggttgtctctgtcttggtga 264

                                                                       
Query: 65  tgggagagcccagcaagctggactttgcagaataaaacactctttgcatttacatactat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgggagagcccagcaagctggactttgcagaataaaacactctttgcatttacatactat 324

                                                                       
Query: 125 ttgagtctcgggtgtcattcttctgcaaatcatggtcccttacattaactcaccacttat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgagtctcgggtgtcattcttctgcaaatcatggtcccttacattaactcaccacttat 384

                                                                       
Query: 185 caatcgctttccccagctacgcctcgaaacagccaaccatgagccaggaaaggaaactta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caatcgctttccccagctacgcctcgaaacagccaaccatgagccaggaaaggaaactta 444

                                                                       
Query: 245 gcacccgcctctcccttcccctttcctacccaaaagctaccctagcctgcaagcagtcaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcacccgcctctcccttcccctttcctacccaaaagctaccctagcctgcaagcagtcaa 504

                                                                       
Query: 305 tggatgggctctacgattcgtctttggagaccccttctttttttctgtccttccttctct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tggatgggctctacgattcgtctttggagaccccttctttttttctgtccttccttctct 564

                                                                       
Query: 365 ctgagcttacagagtaagggcaactaatagaagacaagacaggagagccagtctccaact 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgagcttacagagtaagggcaactaatagaagacaagacaggagagccagtctccaact 624

                                                                       
Query: 425 gcagaatattaacaagcatggtctgagaatcccaaactgggagctcttggatgctgtaac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcagaatattaacaagcatggtctgagaatcccaaactgggagctcttggatgctgtaac 684

                                                
Query: 485 ccagcacctcagacacacacacacacacacacacaca 521
           |||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccagcacctcagacacacacacacacacacacacaca 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no527_m04.g1 MSMg01no527_m04.g1 CHROMAT_FILE:
MSMg01no527_m04.g1 PHD_FILE: MSMg01no527_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:08 2005
         (572 letters)



>mm_chr14_55112137_55113108
          Length = 972

 Score = 1106 bits (572), Expect = 0.0
 Identities = 572/572 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagagagtcaagtattccaagagtaggtctgttgaggggcaccgtcctctgcttgcttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 cagagagtcaagtattccaagagtaggtctgttgaggggcaccgtcctctgcttgcttgg 713

                                                                       
Query: 61  cacagcaggggttatgctatgccagagtgtggctccaggcctaggagccaacctaaagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 cacagcaggggttatgctatgccagagtgtggctccaggcctaggagccaacctaaagga 653

                                                                       
Query: 121 gaggacctgaattcaggggcagggttctgtggagatcctccattctttactgatcactat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 gaggacctgaattcaggggcagggttctgtggagatcctccattctttactgatcactat 593

                                                                       
Query: 181 ggcaacagaatgctaagactttatcatgctaaaaatatggataattgcccttaggtttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ggcaacagaatgctaagactttatcatgctaaaaatatggataattgcccttaggtttta 533

                                                                       
Query: 241 atttgtcagctctcagccttctaggtggggtgatggttttgtgggatgttagcctccaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 atttgtcagctctcagccttctaggtggggtgatggttttgtgggatgttagcctccaga 473

                                                                       
Query: 301 tttactttctacactaaagtactagaggttggctggcgacacaggcagccactggactag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tttactttctacactaaagtactagaggttggctggcgacacaggcagccactggactag 413

                                                                       
Query: 361 gacttggctaggtcctaactcgtgtccagagctctccctgccccagcccttccatccctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gacttggctaggtcctaactcgtgtccagagctctccctgccccagcccttccatccctc 353

                                                                       
Query: 421 aagcctatcttactttattctttgggcctatgggaagggaacaaaagaatgatattctat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 aagcctatcttactttattctttgggcctatgggaagggaacaaaagaatgatattctat 293

                                                                       
Query: 481 ttttaggtaggagctgctggctatggcccagtcccctatagttatcgatttggctgctaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ttttaggtaggagctgctggctatggcccagtcccctatagttatcgatttggctgctaa 233

                                           
Query: 541 tgtatcttgagtggtgcggggactattttttg 572
           ||||||||||||||||||||||||||||||||
Sbjct: 232 tgtatcttgagtggtgcggggactattttttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |