BAC Information

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BAC

Clone NameMSMg01-527P14
Chromosome14 (Build37)
Map Location 89,036,055 - 89,036,497
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527P14.T7 (MSMg01no527_p14.b1)MSMg01-527P14.TJ (MSMg01no527_p14.g1)
ACCAG597201AG597202
length7751,560
length of high quality
(start - end)		449 (46 - 494)---
definitionCHROMAT_FILE: MSMg01no527_p14.b1 PHD_FILE: MSMg01no527_p14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:26 2005CHROMAT_FILE: MSMg01no527_p14.g1 PHD_FILE: MSMg01no527_p14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGAAATGATGTAGTTCCACAAGGAAGATTTTCCTTGAAGACCTTG
GACTAATCATTAAGCATCTTTTTCCATAAATGAACAAAAGTTAGAAAAAC
CATGGGAGAAAGAGATAGTGATGCACAGAAACAGCCATTCCATGACAAGT
AGCAAGAGGTTCGGATTAATTTAACTTTGGTTGTGACAGATGCAAAGACA
ATTTAATAAATAAAAACTTTACTTTTAATATAAGTAGATCTTTATATCTA
GGTGACTTAACTGGACATAATATACAATGCCATATGACATAATTTCTGGG
GACATCATGACTCAATCAATAGCCCATGATCACATGAGTGGCTGCCTCAC
CAACTTTAGAATATATCTCAAAGCAGATCTACTATAACAAAGTTTCTCAC
CATCTCATACCTTTGTCTCAGCNNCACGCACTCCAGCAGCCATTTCCCAA
GGGATCTTGTTACTCTCCTATAAGAAATGCAAAGTGGGTTCAAGGAAAAA
CAAAGGGGGGGAAACTTTCCAATTCTTTTAACCCCTTCCCCCCCGGGAGA
GAGGGTTTTCTTCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNANTCN
TNCGNTNTGNGGCTGTGGAGGGTNATCGAGTGGTGAGTTATAANNCGCNC
CCGNNNGAGTNNNCCCNTTTCCCGACACTTTGGATTTTTTCGNTGNCTTC
TTNATTCCTCTTCTTATCACACCCT

AAAGACACCACTACAGAGATTNTAGAGAAGCGCTACNGCGAGAGACGAAG
GTGAGAGCGCCCCTCTCTGTATTGAGTGCGCGGGCGCGTATCGTGCGTCG
NANNACTCGTGATCCTCATCTCGACCCGCGAGGAACGGTAGACTACGGCG
CGGTGAGCGTTGATAATACTCACACCNCAGCGCGGGTGATAGCAAAAACA
CAATATAATAATAGCTTTACNATCGCTCCTCGCGTATTTGTCGCGCGCCT
TGCGCCGCTCGAGTGAGCGAGATGTAGAAGTATGAGTATATANAACGCAA
GTGCCGTGCTCGGGCGATGCCGCATATGTCCGCATCGCAGCAAGCACGTT
ATTATTCTGCATTAACGACAGTTTGATTATTCGGCGGATGCGACGCAGAC
CACTAACACAAAGACANCACANGAGCGACCTGAATACGAATCACATATNC
GCGACCAGNTATGTAATCTAGTGCGACGATGAAGTACATAGACGGATTGA
TAACTAGATATGCTCTGGTGTTTATTTCTGTTTCTCCCGCCCCTACCCAC
TATACAAGTATGATAAATATCAACCACACTATCGCACGCTTGCTATATAT
TATGAAACACGATTCGTCGGTGCAGTTACATATGCTTGCACGTGATGCGC
AATAAGATTATAAGAACTCATCAACGCGCCGCGCCGTCGCGTGTTANATG
CTAGCGCAGTCACGATGTCATTACACTGTATGCAGTATTGTAAGATTGCG
CCATGCTCTACGAGACATAGTATCCTCTCGCGCGCGCTGTGTATTACTGT
GCATATAAGCACCGGGCTCAACCTACACACAGATAATTATATATTTGTCG
TACGATGCTCGTATTATATCACCCCCNCNACATATAAACACTCTTCCCCC
CCTACGTGGTGTGCCGTGGCGCGATGAAGGTGTCAATAAGAAATATATTN
GTCTTCTCTCCTCCCAATATGAGAGAGCGGTAAGATAAAGATCGCCACAG
CGAACTGAGGTTATTATATCGTATCTTCTCACCTCCGCCACGAGTGACGC
GCGAATATAAACGACACTACCACGCGCGTTACNCTAGTCATGTATNTACG
CTCTATGCTGCGATACGATATATTACTCACACAAGCAACTACGTGATGGG
GTGGATATGAATACACAGCATCAGCTGTGTAGTGGGGCGTACAGATAGAC
ATATTCTCGCCGGCCGCACCACACAACTTCTACGCTTATNCATTGCGCGC
GCGAGCGCGCCGATGCGGAATTAGTAACTATAATTTAGCACATATATTTA
TTATATATTAACCGCACGCCACCTATGCACGGCGCACCCGCCGAATCAGT
TAGTATTGCTGGTGAACGAGCGGTGTGTTCGTTCGCGCACCCCACAAATG
TAGAGGAGACGTCAAGTCATGTGATGAAGGTGATATCGCTGCACACCCTG
ACCGCTCAGAGTGAGATAACGNCATGATGTAATATATAGCGACACGGACA
CAACAATATATTGACATGAATAGTAACGCGCGACGCCGCACCATATATGT
GACTACGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_p14.b1 MSMg01no527_p14.b1 CHROMAT_FILE:
MSMg01no527_p14.b1 PHD_FILE: MSMg01no527_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:26 2005
         (449 letters)



>mm_chr14_89035851_89036697
          Length = 847

 Score =  841 bits (435), Expect = 0.0
 Identities = 442/445 (99%), Gaps = 2/445 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgaaatgatgtagttccacaaggaagattttccttgaagaccttggactaatca 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 gaattctgaaaagatgtagttccacaaggaagattttccttgaagaccttggactaatca 588

                                                                       
Query: 65  ttaagcatctttttccataaatgaacaaaagttagaaaaaccatgggagaaagagatagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ttaagcatctttttccataaatgaacaaaagttagaaaaaccatgggagaaagagatagt 528

                                                                       
Query: 125 gatgcacagaaacagccattccatgacaagtagcaagaggttcggattaatttaactttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gatgcacagaaacagccattccatgacaagtagcaagaggttcggattaatttaactttg 468

                                                                       
Query: 185 gttgtgacagatgcaaagacaatttaataaataaaaactttacttttaatataagtagat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gttgtgacagatgcaaagacaatttaataaataaaaactttacttttaatataagtagat 408

                                                                       
Query: 245 ctttatatctaggtgacttaactggacataatatacaatgccatatgacataatttctgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ctttatatctaggtgacttaactggacataatatacaatgccatatgacataatttctgg 348

                                                                       
Query: 305 ggacatcatgactcaatcaatagcccatgatcacatgagtggctgcctcaccaactttag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ggacatcatgactcaatcaatagcccatgatcacatgagtggctgcctcaccaactttag 288

                                                                       
Query: 365 aatatatctcaaagcagatctactataacaaagtttctcaccatctcatacctttgtctc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 aatatatctcaaagcagatctactataacaaagtttctcaccatctcatacctttgtctc 228

                                    
Query: 425 agcnncacgcactccagcagccatt 449
           |||  ||||||||||||||||||||
Sbjct: 227 agc--cacgcactccagcagccatt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 847
Length adjustment: 10
Effective length of query: 439
Effective length of database: 837
Effective search space:   367443
Effective search space used:   367443
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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