Query= MSMg01no528_g04.b1 MSMg01no528_g04.b1 CHROMAT_FILE:
MSMg01no528_g04.b1 PHD_FILE: MSMg01no528_g04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:58 2005
(712 letters)
>mm_chr14_32570535_32571643
Length = 1109
Score = 1309 bits (677), Expect = 0.0
Identities = 701/709 (98%), Gaps = 3/709 (0%)
Strand = Plus / Plus
Query: 4 ggaattccatggtttctctagaattcctacagctttttctacataagtactcatgcccac 63
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccatggta-ctctagaattcctacagctttttctacataagtactcatgcccac 262
Query: 64 atataggtctatacataggagaaatacaggcctaaggtacagacacagacaattgaaagg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atataggtctatacataggagaaatacaggcctaaggtacagacacagacaattgaaagg 322
Query: 124 gatagtacctgggccaaaaaaggcaaaaactgaggtctcataaataccttcaagaagcca 183
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gatagtacctaggccaaaaaaggcaaaaactgaggtctcataaataccttcaagaagcca 382
Query: 184 gctctgaagttatgacaagagaacagaactgtgactgtcacaaaaaaacagggtggctct 243
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 383 gctctgaagttatgacaagagaacagaactgtgactgtcacaaaaaa-cagggtggctct 441
Query: 244 ccatgtgctgatatagcttcgagaaataaaatgtaaaaaagataaaaataaaaagcaata 303
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ccatgtgctgatatggcttcgagaaataaaatgtaaaaaagataaaaataaaaagcaata 501
Query: 304 actataagaaatgtttacctttagttagaaataggaagaggtaagtctatgttcacattt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 actataagaaatgtttacctttagttagaaataggaagaggtaagtctatgttcacattt 561
Query: 364 gattagcatgaacactgaacccatagagggatgacaagatattaaaagagtagggctgag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 562 gattagcatgaacactgaacccatagagggatgacaagatattaaaagagtagggttgag 621
Query: 424 tggctggttggtttcgggtacacttaatactgggcaggcatacagaaggctggtgtgtgg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tggctggttggtttcgggtacacttaatactgggcaggcatacagaaggctggtgtgtgg 681
Query: 484 ggaggaagtggggagggagagctacttcattgttattctctattactgtagtttctataa 543
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ggagga-gtggggagggagagctacttcattgttattctctattactgtagtttctataa 740
Query: 544 ttttctatatatgataatactgctcaaaaaataaaacatactaaagaaaaaaattaaaag 603
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 741 ttttctatatatgataatactgctcaaaaaataaaacatactaaagaaaagaattaaaag 800
Query: 604 atggtcatgaaaaaattccaagaatttggttccaagtacaaacaataaaaaatgaaccag 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atggtcatgaaaaaattccaagaatttggttccaagtacaaacaataaaaaatgaaccag 860
Query: 664 gaattgggtagtttttaagtatttcttttggaaatacttaaaactactg 712
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gaattgggtagtttttaagtatttcttttggaaatacttaaaactactg 909
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1109
Length adjustment: 10
Effective length of query: 702
Effective length of database: 1099
Effective search space: 771498
Effective search space used: 771498
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no528_g04.g1 MSMg01no528_g04.g1 CHROMAT_FILE:
MSMg01no528_g04.g1 PHD_FILE: MSMg01no528_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:58 2005
(629 letters)
>mm_chr14_32614704_32615732
Length = 1029
Score = 888 bits (459), Expect = 0.0
Identities = 475/487 (97%), Gaps = 11/487 (2%)
Strand = Plus / Minus
Query: 1 catccagctggaatttgtcttacattatatgactctcctgcttctttctctcatcttact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 catccagctggaatttgtcttacattatatgactctcctgcttctttctctcatcttact 428
Query: 61 gcttgagcatgatgctaatatatgtggagaaagtgggcggccacgcacactcctggattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gcttgagcatgatgctaatatatgtggagaaagtgggcggccacgcacactcctggattt 368
Query: 121 gagaaaacatactttaaaaagtcttcccatttgcaccaacactcatgcttgtgcacacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gagaaaacatactttaaaaagtcttcccatttgcaccaacactcatgcttgtgcacacat 308
Query: 181 gcacacacacacacaagtgtgtgccaaatttaaaaaaatacatatctttggaagcccact 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 307 gcacacacacacacaagtgtgtgccaaattttaaaaaatacatatctttggaagcccact 248
Query: 241 aataaatcaatactcggtgaccatagagtagaaaataagaaaaatatagccaggcatggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aataaatcaatactcggtgaccatagagtagaaaataagaaaaatatagccaggcatggt 188
Query: 301 agtgtttttgcacgcctctaatcccagcacttgagaggcaggagcaggaggatatcttga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 agtgtttttgcacgcctctaatcccagcacttgagaggcaggagcaggaggatatcttga 128
Query: 361 gtttgaggccagcctggtgtacagagctagttccaggacagtcatggctacactgagaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 gtttgaggccagcctggtgtacagagctagttccaggacagtcatggctacactgagaaa 68
Query: 421 ccctattcaaaaaaaaa-----------aaaatgttttgtaaagctaaaagtcacttaga 469
||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 67 ccctattcaaaaaaaaaaaaaaaaaagtaaaatgttttgtaaagctaaaagtcacttaga 8
Query: 470 gtaaatg 476
|||||||
Sbjct: 7 gtaaatg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
