Query= MSMg01no528_k22.b1 MSMg01no528_k22.b1 CHROMAT_FILE:
MSMg01no528_k22.b1 PHD_FILE: MSMg01no528_k22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:21 2005
(611 letters)
>mm_chr14_39390969_39391979
Length = 1011
Score = 1158 bits (599), Expect = 0.0
Identities = 605/607 (99%)
Strand = Plus / Plus
Query: 5 gaattcttctgcctacctaccattaagatggaatgtccataccctggacaaagcaagggt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttctgcctacctaccattaagatggaatgtccataccctggacaaagcaagggt 264
Query: 65 atggctccagagagtggagaaaggaggagtgaggactggcaaggtcactgattcatgtga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atggctccagagagtggagaaaggaggagtgaggactggcaaggtcactgattcatgtga 324
Query: 125 ctgtaagttaacttgtatttccatcacattcctgggtcccctttattcatctgaatgtga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgtaagttaacttgtatttccatcacattcctgggtcccctttattcatctgaatgtga 384
Query: 185 tagtgcttgagagaaacagaggtcattggatgacttagaaggaagagggagtgaaggctt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagtgcttgagagaaacagaggtcattggatgacttagaaggaagagggagtgaaggctt 444
Query: 245 tgtttacacaaggaagtagattttgagtcattttttttccaacattacagtctttgaaag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtttacacaaggaagtagattttgagtcattttttttccaacattacagtctttgaaag 504
Query: 305 tttttttctaaaaaaaaaaaatcactgctattctttttgccatacattgaaaaattgttt 364
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tatttttcttaaaaaaaaaaatcactgctattctttttgccatacattgaaaaattgttt 564
Query: 365 ctgatcttgtagctgcaaaggactggaacaaaacaacatcacagagttgaagtacagcaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgatcttgtagctgcaaaggactggaacaaaacaacatcacagagttgaagtacagcaa 624
Query: 425 gagcagactgcccttattttatcatcttatctattctctaatgagaaactacagaaaaat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gagcagactgcccttattttatcatcttatctattctctaatgagaaactacagaaaaat 684
Query: 485 attaaaggaaaggtcaccttttatttagcagaagaaaatgtatgcagatagctgatgctc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 attaaaggaaaggtcaccttttatttagcagaagaaaatgtatgcagatagctgatgctc 744
Query: 545 tgaactccttaacaaaatgagctcagtctgtaacagtcaacactcagaaataactcattt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgaactccttaacaaaatgagctcagtctgtaacagtcaacactcagaaataactcattt 804
Query: 605 ctaacaa 611
|||||||
Sbjct: 805 ctaacaa 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_k22.g1 MSMg01no528_k22.g1 CHROMAT_FILE:
MSMg01no528_k22.g1 PHD_FILE: MSMg01no528_k22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:21 2005
(597 letters)
>mm_chr14_39576908_39577906
Length = 999
Score = 1083 bits (560), Expect = 0.0
Identities = 567/570 (99%), Gaps = 2/570 (0%)
Strand = Plus / Minus
Query: 1 catgaatgaactctgaaattcggactgatatttcagtccaaatttgaagaagttgaagac 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 770 catgaatgaactctgaaattcagactgatatttcagtccaaatttgaagaagttgaagac 711
Query: 61 tgaaagaaaccaagaattatttgtattttatgttttaatgttactttctgtagacaattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 tgaaagaaaccaagaattatttgtattttatgttttaatgttactttctgtagacaattt 651
Query: 121 attcca--ttttttttcctttttaatagtgcaggttcttactctatagccctgtcctcca 178
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 attccactttttttttcctttttaatagtgcaggttcttactctatagccctgtcctcca 591
Query: 179 accaaagatcatcctgcctcaagctttcaagtatacatgcaaattctgaagcaagttctt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 accaaagatcatcctgcctcaagctttcaagtatacatgcaaattctgaagcaagttctt 531
Query: 239 agcccacataaattgatgcaatttgaaaacacacatacttcaacctcatcaatggaaaat 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 agcccacataaattgatgcaatttgaaaacacacatacttcaacctcatcaatggaaaat 471
Query: 299 atacatggtgtgcagacatggaaactataaaacgaaacattggctaatgagtagaaactg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 atacatggtgtgcagacatggaaactataaaacgaaacattggctaatgagtagaaactg 411
Query: 359 aggtactgctgtggtaaactcactaagccagccactccccggtatggtatacatcactag 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 aggtactgctgtggtaaactcactaagccagccactccccggtatggtatacatcactag 351
Query: 419 aaagctgtgaacttctaccaaggaagctgcagtagttagtgaaagattctctagctgtct 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 aaagctgtgaacttctaccaaggaagctgcagtagttagtgaaagattctctagctgtct 291
Query: 479 ctcagtagagagattatcctgatgggagaaatgcagactgcagaattaacatgcaatttg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ctcagtagagagattatcctgatgggagaaatgcagactgcagaattaacatgcaatttg 231
Query: 539 ctgcactgtattctaaggatcaccttttct 568
||||||||||||||||||||||||||||||
Sbjct: 230 ctgcactgtattctaaggatcaccttttct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 999
Length adjustment: 10
Effective length of query: 587
Effective length of database: 989
Effective search space: 580543
Effective search space used: 580543
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
