Query= MSMg01no529_c08.b1 MSMg01no529_c08.b1 CHROMAT_FILE:
MSMg01no529_c08.b1 PHD_FILE: MSMg01no529_c08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:59 2005
(680 letters)
>mm_chr14_80681592_80682671
Length = 1080
Score = 1104 bits (571), Expect = 0.0
Identities = 634/677 (93%), Gaps = 35/677 (5%)
Strand = Plus / Minus
Query: 4 ggaattctctgggcttcaggcttggcataaagactatcatttaccccacagtagacgttg 63
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ggaattctctgggcggcaggcttggcataaagactatcatttaccccacagtagacgttg 618
Query: 64 agaagcatgaaaggcctcacttgaacaattatagttgcatgtaaaacgacaaattaaatt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 agaagcatgaaaggcctcacttgaacaattatagttgcatgtaaaacgacaaattaaatt 558
Query: 124 tatgcccacccctgaaattggcattgttgattagcatattaatgacacagatgttgttat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tatgcccacccctgaaattggcattgttgattagcatattaatgacacagatgttgttat 498
Query: 184 gaatatatggcagatatcatatatctgaccaaagaaaggactatgtttcaatttaattgt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gaatatatggcagatatcatatatctgaccaaagaaaggactatgtttcaatttaattgt 438
Query: 244 acaataaattacatatgtttatgtgtctattcataacaattctcatgagttgacaaattt 303
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 437 acaataaattacatatgtttatgtgtctattcataacaattctcatgtgttgactaattt 378
Query: 304 tgataaattagttcaaattaggagttgattaacatcaagtagaagctatgagttgataca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tgataaattagttcaaattaggagttgattaacatcaagtagaagctatgagttgataca 318
Query: 364 tcaaatgatagctgatgtaactgtctacagagcttatctcctgaaatttgtgataacctt 423
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 317 tcaaatgatagctgatgtaactctctacagagctcatctcctgaaatttgtgataacctt 258
Query: 424 cagagccttatttctcaaactcttttcaaccccattgcagaacataagatgagtctcaca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cagagccttatttctcaaactcttttcaaccccattgcagaacataagatga-------- 206
Query: 484 atttcaggtaagtgtatatgtaaccctgctgcttaaaagttgagtctgtcaaatctgaat 543
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 -------------------gtaaccctgctgcttaaaagttgagtctgtcaaatctgaat 165
Query: 544 ttctccacctaacttttgattgatggactggctagtggacaaatatacagagtagggctc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 ttctccacctaacttttgattgatggactggctagtggacaaatatacagagtagggctc 105
Query: 604 ccaaattcaaacatatatatctatatatctacatagatatatagataaatacagatattc 663
||||||||||||| |||||||||||| ||| ||||||||||||||||||||||
Sbjct: 104 ccaaattcaaaca--------tatatatctacacagagatatagataaatacagatattc 53
Query: 664 ttcacaatatggaatgc 680
|||||||||||||||||
Sbjct: 52 ttcacaatatggaatgc 36
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space: 716900
Effective search space used: 716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no529_c08.g1 MSMg01no529_c08.g1 CHROMAT_FILE:
MSMg01no529_c08.g1 PHD_FILE: MSMg01no529_c08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:59 2005
(574 letters)
>mm_chr14_80517763_80518733
Length = 971
Score = 1071 bits (554), Expect = 0.0
Identities = 569/574 (99%), Gaps = 3/574 (0%)
Strand = Plus / Plus
Query: 1 ttcgaagttatctagtagttgtttcaagttcaaatgtttttgatggtcaaaaatattctt 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 ttcgaagttatctagtagttgtttcaagttcaa-tgtttttgatggtcaaaaatattctt 259
Query: 61 tttttttctattagaattcaattaaagttttttttttctccaaaagtactttaaagtaac 120
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 260 tttttt-ctattagaattcaattaaagttttttttt-ctccaaaagtactttaaagtaac 317
Query: 121 atttctctgttgcaatttagtttcaatcaattaaactgttccatgatggtgggagctggt 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 318 atttctctgttgcaatttagtttcagtcaattaaactgttccatgatggtgggagctggt 377
Query: 181 ttgggtcctatgtgccaggtaagcactctactagtgatctatatccctagtcccttttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ttgggtcctatgtgccaggtaagcactctactagtgatctatatccctagtcccttttta 437
Query: 241 tctcttattttgagatagcatctctcattaacgttctcaggctagagtcgatctcatgtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tctcttattttgagatagcatctctcattaacgttctcaggctagagtcgatctcatgtc 497
Query: 301 ttcttgcctctgaagcatctggaatgataggcctgcctttatgtcatttaatttttttaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 498 ttcttgcctctgaagcatctggaatgataggcctgcctttatgtcatttaattttttaaa 557
Query: 361 gaaaatgtattatttcttcttggtaattcatgctggctttggagggatatttattttttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gaaaatgtattatttcttcttggtaattcatgctggctttggagggatatttattttttc 617
Query: 421 aatctgtaagatttcctttctattttgctaagtgagagcccatggagaacatcacactat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aatctgtaagatttcctttctattttgctaagtgagagcccatggagaacatcacactat 677
Query: 481 caatatttctatgatcacattaatattgccgtagtggtgtggcccaaatgacttttaatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 caatatttctatgatcacattaatattgccgtagtggtgtggcccaaatgacttttaatc 737
Query: 541 gtaggttatggaaggtggattcagggaaacagaa 574
||||||||||||||||||||||||||||||||||
Sbjct: 738 gtaggttatggaaggtggattcagggaaacagaa 771
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 971
Length adjustment: 10
Effective length of query: 564
Effective length of database: 961
Effective search space: 542004
Effective search space used: 542004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
