BAC Information

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BAC

Clone NameMSMg01-529D20
Chromosome14 (Build37)
Map Location 40,978,111 - 40,978,512
singlet/doubletsinglet
Overlap genenone
Upstream geneNrg3, LOC100040439
Downstream geneLOC218945, LOC100040470, LOC382876, Sh2d4b, Tspan14, 5730469M10Rik, Dydc2, EG622782, Dydc1, Mat1a, Sftpa1, LOC100040498, LOC666079, Mbl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529D20.T7 (MSMg01no529_d20.b1)MSMg01-529D20.TJ (MSMg01no529_d20.g1)
ACCAG598166AG598167
length778767
length of high quality
(start - end)
455 (46 - 500)460 (74 - 533)
definitionCHROMAT_FILE: MSMg01no529_d20.b1 PHD_FILE: MSMg01no529_d20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:07 2005CHROMAT_FILE: MSMg01no529_d20.g1 PHD_FILE: MSMg01no529_d20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTTTTTTTTTTTTTGACACAGAACACTCCACAAACCAGACATAA
TCTTAGAGGTTACCACTATACCAAAAATTTTTTGCTAAAATATCAAATTT
AAGAAACCTGTATTCAATATATTTATATTAAAAGAAAAACTTATCCAAAA
CAACAAAAATTAAAAGTAAATCTAGATTTCTTTCCTAAATGATGGTAAAT
AGTCATGGGCAAAGTGACTGTATTTGGAACTACCTAGGAGACTGGCTGTG
TCTGTGAAACCATATAAAAAGATCTAAGAAGGATGCAAGACCCATACTGA
ATATGAGCAGTACCATACCATGGACTGAAGGCAGGTGCCATTCAGACTAA
AGAAAAAGAAAAGACATGGAGAAAGCAGGGTATACCCATCTTCCTTTGTT
TCCAGATTGGGGCAAAATATGGACACTTGTCTCAAGCACCTGTACCAGAC
CTAGAACTGTTCTTCATTCCATGCTTTTCCTGTCTTTAATGAAATGTGTT
CTAAAATTGTAAGACACAACAAACTAATCACTTTATTTAAATTGATTTTG
TCAGGCCTTTTTACCACAGCAATTTGAGAAAAATATACTTATATTTGACC
ATTTGGTAACACAAGGAANGTTTTGTTTATCCAAACCAACTTTGCCAATG
CCCATATGAAAATTGGGAACTTTAATTTGAAGGGAGGGAAAATTCCAAAA
ATTTTTGGAAACTGGTATTTTTGGAAAA
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTGGGAATAAAAGAAAACCCAGGGCA
GTGAAAACTATTTTCAACACTAAGAACTTCTGGGTGAATCACCATTCCTG
ACTTCAAGCTGTGTTACAGAGCAATAGTTATTCAAAACTGCATGGTATTG
GTTCAGACACAGGCAAGGAGATCAATGGAATAGAAATTGAAGATCCTTGT
ACAAAGTTCAAGTCCAGGGTGATCAAGGACCTACACATAAAACCAGATAC
CGTGAAACTTATAGAGGAGAAACTGGGAAGAGCTTCAACCACATGGGCAC
ATGAGAAAAATACCTGAACAGAACACAAATTGCTTATGCTCTAAGATCAA
GAATTAACAAGTGTGACTTCATAAAATTTCAAAGCTTCTGTAAGGCAAAG
AACACTGTCAATAGGACAAAAAGGCAACCGACCGTTTGGGAAAAGATCTT
TTCCAATCCTACTGACAGAGGGCTAATTATCCAATATATAAAAAGAACTC
AAGAAGTTAGACTCCAAAGAATCAAATACCCCTATTTAAAATGAAGTATA
GCATGGGAGGAAGAAGATTGTTATTGCGAATATCATATGACCCAGTACAG
GGGAATGTCCGGGCCAGGAAACAAGAATGGGTTAGTTGGAAAACAAGGAC
GGGAGGGGGTTTAATAAGGGGGGTTTTGGGGAAATACTATTTTATTCGCC
ACTTCTGTAAAACTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_d20.b1 MSMg01no529_d20.b1 CHROMAT_FILE:
MSMg01no529_d20.b1 PHD_FILE: MSMg01no529_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:07 2005
         (455 letters)



>mm_chr14_40978111_40978965
          Length = 855

 Score =  735 bits (380), Expect = 0.0
 Identities = 398/406 (98%), Gaps = 4/406 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcattttttttttttttgacacagaacactccacaaaccagacataatcttagag 63
           ||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ggaattca----ttttttttttgacacagaacactccacaaaccagacataatcttagag 347

                                                                       
Query: 64  gttaccactataccaaaaattttttgctaaaatatcaaatttaagaaacctgtattcaat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gttaccactataccaaaaattttttgctaaaatatcaaatttaagaaacctgtattcaat 287

                                                                       
Query: 124 atatttatattaaaagaaaaacttatccaaaacaacaaaaattaaaagtaaatctagatt 183
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 286 atatttatattaaaagaaaaacttatccaacacaacaaaaattaaaagtaaatctagatt 227

                                                                       
Query: 184 tctttcctaaatgatggtaaatagtcatgggcaaagtgactgtatttggaactacctagg 243
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 tctttcttaaatgatggtaaatagtcatgggcaaagtgactgtatttggaactacctagg 167

                                                                       
Query: 244 agactggctgtgtctgtgaaaccatataaaaagatctaagaaggatgcaagacccatact 303
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 166 agactggctgtgtctgtgaaaccatataaaaatatctaagaaggatgcaagacccatact 107

                                                                       
Query: 304 gaatatgagcagtaccataccatggactgaaggcaggtgccattcagactaaagaaaaag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 gaatatgagcagtaccataccatggactgaaggcaggtgccattcagactaaagaaaaag 47

                                                         
Query: 364 aaaagacatggagaaagcagggtatacccatcttcctttgtttcca 409
           ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 46  aaaagacatggagaaagcaggttatacccatcttcctttgtttcca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)