BAC Information

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BAC

Clone NameMSMg01-529G06
Chromosome14 (Build37)
Map Location 13,303,532 - 13,303,774
singlet/doubletsinglet
Overlap geneCadps
Upstream geneLOC667059, LOC100041996, Ptprg, LOC100042441, 3830406C13Rik, EG667072, Fezf2
Downstream geneEG432822, LOC100042022, LOC100042026, EG328354, Synpr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529G06.T7 (MSMg01no529_g06.b1)MSMg01-529G06.TJ (MSMg01no529_g06.g1)
ACCAG598282AG598283
length743740
length of high quality
(start - end)
244 (81 - 324)578 (80 - 657)
definitionCHROMAT_FILE: MSMg01no529_g06.b1 PHD_FILE: MSMg01no529_g06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:20 2005CHROMAT_FILE: MSMg01no529_g06.g1 PHD_FILE: MSMg01no529_g06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGAATAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTTGACTTACCGCAAGAGATAGGAGAGGTCCAATGGGTA
GGTCCAATGGGTAGGTTTGATTAAGTTGTAAGATCTCATGATGGGTAATC
CTGTACATATACCTAAAATAATTTTTGGTCTTTGGGAATTTAAAATATGC
TGAGGGTTTTTTTTCTCTTATTGGATATTTTCTTTATTTACATTTGAGGT
TTTTTTTTTTATTTCTAATTTCAAAAACCGGTGTTGAGAACAAGATTAAA
GTCACCATGTTTGTTTACCCTGCCTGTCTTCTATATCTGTAAGATGAAAA
CATTGCTTATGAGAGATTATCATTTGGATGATTGACATTTGCCCAAACCC
CAACTTTTGGGTAAGGTAAGAAGAAATGCCTTTTTTGGAAGTTGGGTTTC
CAAAAATATATTTTTGTTGTGCAGTTCTGGGATTTCTTTGCTGTGGTGGT
GCCTCTTTGGTGTGGCCAAGGAACATACACATTCTCTGTGATCTGGGAGT
AGCCTTAGAGAGTAGCTTGATTACTAATCGAGTATGTCTGCCGTTTATTC
CTTCTGTTATTCACTTAAACGCACAGCTGCATCCTCTTCATATCCATGGC
TTCACAAATACGTGCACTTGGTCAAGCCTTTACCTCTCACAGCCAGGAAA
AGAAGGTCAGAATCCCCCAAGTTCCAGGAGATGGTTTGGAATA
NNNCCACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCAGAGAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTG
GAGATCAGTCTGGCGGTTCCTCAGAATACTGGATATAGTACTACCGGAGG
ATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGT
AAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGC
CAGAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGA
AGATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAAT
GAATTTATGAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATCCT
GAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGA
TAAGTGGATATTAGCCCAAAACCTAAGATACCCAAGATATAAGATACAAT
TTCCTAAACACATGAAACTCAAGAAAAATGATGACTGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_g06.b1 MSMg01no529_g06.b1 CHROMAT_FILE:
MSMg01no529_g06.b1 PHD_FILE: MSMg01no529_g06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:20 2005
         (244 letters)



>mm_chr14_13303332_13303974
          Length = 643

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%), Gaps = 1/244 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taggagaggtccaatgggtaggtccaatgggtaggtttgattaagttgtaagatctcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggagaggtccaatgggtaggtccaatgggtaggtttgattaagttgtaagatctcatg 260

                                                                       
Query: 61  atgggtaatcctgtacatatacctaaaataatttttggtctttgggaatttaaaatatgc 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgggtaatcctgtatatatacctaaaataatttttggtctttgggaatttaaaatatgc 320

                                                                       
Query: 121 tgagggttttttttctcttattggatattttctttatttacatttgaggttttttttttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 tgagggttttttttctcttattggatattttctttatttacatttgaggtttttttttt- 379

                                                                       
Query: 181 atttctaatttcaaaaaccggtgttgagaacaagattaaagtcaccatgtttgtttaccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atttctaatttcaaaaaccggtgttgagaacaagattaaagtcaccatgtttgtttaccc 439

               
Query: 241 tgcc 244
           ||||
Sbjct: 440 tgcc 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 643
Length adjustment: 9
Effective length of query: 235
Effective length of database: 634
Effective search space:   148990
Effective search space used:   148990
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)