Query= MSMg01no530_g07.b1 MSMg01no530_g07.b1 CHROMAT_FILE:
MSMg01no530_g07.b1 PHD_FILE: MSMg01no530_g07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:41 2005
(689 letters)
>mm_chr14_104452142_104453228
Length = 1087
Score = 1259 bits (651), Expect = 0.0
Identities = 676/685 (98%), Gaps = 2/685 (0%)
Strand = Plus / Plus
Query: 5 gaattcttgagcgtacgcttctctttgatttaagcattggaagatacagacttgggcttc 64
|||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaatccttgagcggatgcttctctttgatttaagcattggaagatacagacttgggcttc 264
Query: 65 ttccaaagcccaagaggaggctgagagtggtgaagatcaaggaacccttcagattaaagc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttccaaagcccaagaggaggctgagagtggtgaagatcaaggaacccttcagattaaagc 324
Query: 125 catgcttccacgtattgatttgtctgcacacaccatgagcttactgtaaaaaaaagccaa 184
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cacgcttccacgtattgatttgtctgcacacaccatgagcttactgtaaaaaaaagccaa 384
Query: 185 tgctaggtgcactgagaagacgtaattgctgaagcttaagggatcccatgatgttcatat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgctaggtgcactgagaagacgtaattgctgaagcttaagggatcccatgatgttcatat 444
Query: 245 ccaaacacatacataaaacatactgagcataccgcccgcccgacactttaaacattttta 304
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccaaacacatacataa--catactgagcataccgcccgcccgacactttaaacattttta 502
Query: 305 gaaatcagaaatgacaaggcaatgtcatccatacctacaaatattctgtttttcagagta 364
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gaaattagaaatgacaaggcaatgtcatccatacctacaaatattctgtttttcagagta 562
Query: 365 aaacattctagagaccctttgtgtttatttttgcccactctggaaccctttattctgagg 424
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 563 aaacattctagagaccctttgtgtttatttttgcccactctggatccctttattctgagg 622
Query: 425 gagtagggctatcagatacaggtgtcgctgggcatacaggatgcaggggttcaaatccag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gagtagggctatcagatacaggtgtcgctgggcatacaggatgcaggggttcaaatccag 682
Query: 485 actctgccacttcctactggatgagagtgagcactgcattccagagaaggggatgcctgc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 actctgccacttcctactggatgagagtgagcactgcattccagagaaggggatgcctgc 742
Query: 545 agaccgtgcagtccaacatctagtaaagaggtatttcactttaacgtaaaaagagttccc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 agaccgtgcagtccaacatctagtaaagaggtatttcactttaacgtaaaaagagttccc 802
Query: 605 ttccttctgccagaagataaacaaaacaaaacaccctaaatggctaaagcagtggcattt 664
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ttccttctgccagaagaaaaacaaaacaaaacaccctaaatggctaaagcagtggcattt 862
Query: 665 ctcaggtggcagtgtagcccagtgg 689
|||||||||||||||||||||||||
Sbjct: 863 ctcaggtggcagtgtagcccagtgg 887
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1087
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1077
Effective search space: 731283
Effective search space used: 731283
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no530_g07.g1 MSMg01no530_g07.g1 CHROMAT_FILE:
MSMg01no530_g07.g1 PHD_FILE: MSMg01no530_g07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:41 2005
(581 letters)
>mm_chr14_104629840_104630820
Length = 981
Score = 536 bits (277), Expect = e-156
Identities = 311/323 (96%), Gaps = 2/323 (0%)
Strand = Plus / Minus
Query: 261 atgtatatatatatatatatatatatatatatatat--atatacacatatagcctgttga 318
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 963 atgtatatatatatatatatatatatatatatatatacatacacacatatagcctgttga 904
Query: 319 atctatttactattgcttgtatatgtatgtttttagggctgaccataggaaattgataac 378
||| ||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 903 atccatttactattgattgtatatgtatgtatttagggctgaccatagggaattgataac 844
Query: 379 ctatcgaagggcttgttcctgaagaacgcagattctccctttcttgagagttaataattg 438
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 843 ttatcgaagggcttgttcctgaagaatgcagattctccctttcttgagagttaataattg 784
Query: 439 cccaattttaagcaaaggaattgttgtgtgacagtagatttgcatttagaaatataactt 498
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 783 cccaattttaagcaaaggaattgttgtgtgacagtagatttgcctttagaaatataactt 724
Query: 499 agacaacactgtaatgttgatttgacatagggaccagatgcatcatcaccacacagccca 558
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ggacaacactgtaatgttgatttgacatagggaccagatgcatcatcaccacacagccca 664
Query: 559 ggaaaccaacaagctttctccca 581
||||||||||||||||||||||
Sbjct: 663 agaaaccaacaagctttctccca 641
Score = 74.2 bits (38), Expect = 3e-17
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 262 tgtatatatatatatatatatatatatatatatatatataca 303
||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 921 tgtatgtatatatatatatatatatatatatatatatataca 962
Score = 74.2 bits (38), Expect = 3e-17
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 260 tatgtatatatatatatatatatatatatatatatata 297
||||||||||||||||||||||||||||||||||||||
Sbjct: 923 tatgtatatatatatatatatatatatatatatatata 960
Score = 66.5 bits (34), Expect = 5e-15
Identities = 47/52 (90%), Gaps = 2/52 (3%)
Strand = Plus / Plus
Query: 257 ctata--tgtatatatatatatatatatatatatatatatatatatacacat 306
||||| ||| ||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 912 ctatatgtgtgtatgtatatatatatatatatatatatatatatatatacat 963
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 5
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
