BAC Information

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BAC

Clone NameMSMg01-530J18
Chromosome14 (Build37)
Map Location 31,976,724 - 32,181,526
singlet/doubletdoublet
Overlap geneStab1, Nisch, Tnnc1, Sema3g, Phf7, Bap1, Dnahc1, Capn7
Upstream geneCacna1d, LOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1, Sfmbt1, Tmem110, Mustn1, Itih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3, Pbrm1, EG432834, Nt5dc2
Downstream geneSh3bp5, Mettl6, Eaf1, Colq, Hacl1, Btd, Ankrd28, Galntl2, Dph3, Oxnad1, Msmb, Ncoa4, Timm23, Parg, LOC665601, Ogdhl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530J18.T7 (MSMg01no530_j18.b1)MSMg01-530J18.TJ (MSMg01no530_j18.g1)
ACCAG599206AG599207
length762770
length of high quality
(start - end)		688 (75 - 762)676 (78 - 753)
definitionCHROMAT_FILE: MSMg01no530_j18.b1 PHD_FILE: MSMg01no530_j18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:59 2005CHROMAT_FILE: MSMg01no530_j18.g1 PHD_FILE: MSMg01no530_j18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,180,839 - 32,181,526)(31,976,724 - 31,977,419)
sequence
NAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAGATAGCTTGCGCTAGAAAGCTAGGCTAAAATGCATAGCAA
GAGTCTGTCTCAGAGAAAACACTTCAAGTGATCCCACATAGAAAGCAGAG
CCTGTCATAAACTCTGTTTCACTATATTTTGTCACTACATGGTTCACGGT
TGACGACTCTTACCCGGACTGTGTAATGAATCGTATTCTGTTTCTCATAC
TGAGAAACCACTAGGGTGAAGGTGTGAGTCCCGGGCGTGGTCAGCTTTAT
CTTAGTCAAGTAATGAGGGCTGTTAATTCGAATCCCATCAATGTATGGAG
GTGGGTCAGCTGCACAGATATCATGTTTACAGAAAAGATTTTCAAAGTCA
GGATTAGCTTTGTCTTTTTAAGATACAAAAAAGCATATAAACACATTATT
AACATTACCCACCCCTAATGTAGAACTAAATAAACCTTAGGCATGTTAAA
CTAGCTTCTTAAAGTCCCCCTAATGACTCATCTTATTTTCCTTTCGCTAA
TCAGTGATTTGGTAGGGATTTTTCTCAGACTTTTATAAAGGGTTGTTAAC
AGTGGTTTGTGTGTCTGCACACCCACCATGGAAGTCAGAGGGTAACCTGA
GTCATTTCTCCCCCTCCACCATATGGGTCACAGGGACTGAATTCAGGCTG
TCAGACTTGGCAGCAGACAACCTTTATCTACTGAGCCATCTCACCAGCCC
ATGGGCTAAGTT

NCCCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGAATCTACCCATCTCTCTCC
TCCTCTCCACTAACCTAGAGCTGAGCCCAGGGCCCAGCACACAGTAGGTG
CCTTGTTAAACACCCTTCCTCCTCTTTTCCTGAGCCTACTGCTCTGTAGG
ACACAGCAGGTTTGTGGGTTACCGGATACTTTGTTTGCTCCCACCTGGAG
GTCGGTGAGGTTCCTCTGGGTTCCCCTCCACCCTCCGGAAAGTGCAAAGA
AGCGAGTGGAGCCATACCGGCAGTCCAGAAGTATCTTCTCTGGGAAATTC
CGAGACCAGCCCCAGGGACATAGTTGCCTCCTGATAGCTGCACACGCCGT
ACAGGGTGTGTGAGTGACAAACTTGGTGTGGATGTCGCAACGTTTAGACC
GTACCTGGGACATAGGCAAAATGCACAGTGAGGGGCCTGAGTCTATACCA
ACTGCACAGTTTCCCTTCAGTTCAGTGGGAATGAGCAAGGCCAGGGAAGG
TCCTAGGAAACCTCGTTGTCACCTCCTGTCCCCATGTCTGTGGCTGAAAG
CCTTCAGGTTTTCTCTTTCTCCAGAGGAATCATTTCCATCTAAGGGGAGG
AGCTTGAAGTCCCAAACTGTCACAGGGACAGGGTGTAAAGCAGGGATAAG
AGCTCCCTGCCTTCTTGGTCCAAACAGACACGTCACAAGCCTCACACTGT
GTACAGGGGTACAGTGATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_j18.b1 MSMg01no530_j18.b1 CHROMAT_FILE:
MSMg01no530_j18.b1 PHD_FILE: MSMg01no530_j18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:59 2005
         (688 letters)



>mm_chr14_32180797_32181884
          Length = 1088

 Score = 1330 bits (688), Expect = 0.0
 Identities = 688/688 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaagctaggctaaaatgcatagcaagagtctgtctcagagaaaacacttcaagtgatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gaaagctaggctaaaatgcatagcaagagtctgtctcagagaaaacacttcaagtgatcc 671

                                                                       
Query: 61  cacatagaaagcagagcctgtcataaactctgtttcactatattttgtcactacatggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 cacatagaaagcagagcctgtcataaactctgtttcactatattttgtcactacatggtt 611

                                                                       
Query: 121 cacggttgacgactcttacccggactgtgtaatgaatcgtattctgtttctcatactgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 cacggttgacgactcttacccggactgtgtaatgaatcgtattctgtttctcatactgag 551

                                                                       
Query: 181 aaaccactagggtgaaggtgtgagtcccgggcgtggtcagctttatcttagtcaagtaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 aaaccactagggtgaaggtgtgagtcccgggcgtggtcagctttatcttagtcaagtaat 491

                                                                       
Query: 241 gagggctgttaattcgaatcccatcaatgtatggaggtgggtcagctgcacagatatcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gagggctgttaattcgaatcccatcaatgtatggaggtgggtcagctgcacagatatcat 431

                                                                       
Query: 301 gtttacagaaaagattttcaaagtcaggattagctttgtctttttaagatacaaaaaagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gtttacagaaaagattttcaaagtcaggattagctttgtctttttaagatacaaaaaagc 371

                                                                       
Query: 361 atataaacacattattaacattacccacccctaatgtagaactaaataaaccttaggcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 atataaacacattattaacattacccacccctaatgtagaactaaataaaccttaggcat 311

                                                                       
Query: 421 gttaaactagcttcttaaagtccccctaatgactcatcttattttcctttcgctaatcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gttaaactagcttcttaaagtccccctaatgactcatcttattttcctttcgctaatcag 251

                                                                       
Query: 481 tgatttggtagggatttttctcagacttttataaagggttgttaacagtggtttgtgtgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tgatttggtagggatttttctcagacttttataaagggttgttaacagtggtttgtgtgt 191

                                                                       
Query: 541 ctgcacacccaccatggaagtcagagggtaacctgagtcatttctccccctccaccatat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ctgcacacccaccatggaagtcagagggtaacctgagtcatttctccccctccaccatat 131

                                                                       
Query: 601 gggtcacagggactgaattcaggctgtcagacttggcagcagacaacctttatctactga 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 gggtcacagggactgaattcaggctgtcagacttggcagcagacaacctttatctactga 71

                                       
Query: 661 gccatctcaccagcccatgggctaagtt 688
           ||||||||||||||||||||||||||||
Sbjct: 70  gccatctcaccagcccatgggctaagtt 43


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no530_j18.g1 MSMg01no530_j18.g1 CHROMAT_FILE:
MSMg01no530_j18.g1 PHD_FILE: MSMg01no530_j18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:59 2005
         (676 letters)



>mm_chr14_31976544_31977619
          Length = 1076

 Score = 1237 bits (640), Expect = 0.0
 Identities = 673/696 (96%), Gaps = 20/696 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggaatctacccatctctctcctcctctcc-actaacctagagctgagcccagggccca 59
           ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 181 caggaatctacccatctctctcctcctctccaactaacccagagctgagcccagggccca 240

                                                                       
Query: 60  gcacacagtaggtgccttgttaaacacccttcctcctcttttcctgagcctactgctctg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gcacacagtaggtgccttgttaaacacccttcctcctcttttcctgagcctactgctctg 300

                                                                       
Query: 120 taggacacagcaggtttgtgggttaccggatactttgtttgctcccacctggaggtcggt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taggacacagcaggtttgtgggttaccggatactttgtttgctcccacctggaggtcggt 360

                                                                       
Query: 180 gaggtt-------------------cctctgggttcccctccaccctccggaaagtgcaa 220
           ||||||                   |||||||||||||| ||||||||||||||||| ||
Sbjct: 361 gaggtttctctgggtcccccgctgccctctgggttccccgccaccctccggaaagtgtaa 420

                                                                       
Query: 221 agaagcgagtggagccataccggcagtccagaagtatcttctctgggaaattccgagacc 280
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agaagcgagtggagccataccggcagtccagaagtatcttctctgggaaattccgagacc 480

                                                                       
Query: 281 agccccagggacatagttgcctcctgatagctgcacacgccgtacagggtgtgtgagtga 340
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 agccccagggacatagttgcctcctgatagctgcacacgccgtacagggtgtgtgagtga 540

                                                                       
Query: 341 caaacttggtgtggatgtcgcaacgtttagaccgtacctgggacataggcaaaatgcaca 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 caaacttggtgtggatgtcgcaacgtttagaccgtacctgggacataggcaaaatgcaca 600

                                                                       
Query: 401 gtgaggggcctgagtctataccaactgcacagtttcccttcagttcagtgggaatgagca 460
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gtgaggggcctgagtctataccaactgcacagtttcccttcagttcagtgggaatgagca 660

                                                                       
Query: 461 aggccagggaaggtcctaggaaacctcgttgtcacctcctgtccccatgtctgtggctga 520
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aggccagggaaggtcctaggaaacctcgttgtcacctcctgtccccatgtctgtggctga 720

                                                                       
Query: 521 aagccttcaggttttctctttctccagaggaatcatttccatctaaggggaggagcttga 580
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 aagccttcaggttttctctttctccagaggaatcatttccatctaaggggaggagcttga 780

                                                                       
Query: 581 agtcccaaactgtcacagggacagggtgtaaagcagggataagagctccctgccttcttg 640
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 agtcccaaactgtcacagggacagggtgtaaagcagggataagagctccctgccttcttg 840

                                               
Query: 641 gtccaaacagacacgtcacaagcctcacactgtgta 676
           ||||||||||||||||||||||||||||||||||||
Sbjct: 841 gtccaaacagacacgtcacaagcctcacactgtgta 876


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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