BAC Information

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BAC

Clone NameMSMg01-531B13
Chromosome14 (Build37)
Map Location 90,893,774 - 90,894,184
singlet/doubletsinglet
Overlap genenone
Upstream geneEG328451
Downstream geneLOC100043336, EG639558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531B13.T7 (MSMg01no531_b13.b1)MSMg01-531B13.TJ (MSMg01no531_b13.g1)
ACCAG599580AG599581
length760761
length of high quality
(start - end)
484 (77 - 560)409 (79 - 487)
definitionCHROMAT_FILE: MSMg01no531_b13.b1 PHD_FILE: MSMg01no531_b13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:38 2005CHROMAT_FILE: MSMg01no531_b13.g1 PHD_FILE: MSMg01no531_b13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATCTATACAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTAGAGGATC
CTCGGAATTCAAGTAATTTTTATGGGGTCAAAAAAGCACCTAGAAAACTT
TCGACCCCAAATCGCTCCTGTCTAAAAGAAATGCATGGATAAAAATGTAG
CACAGACTGAAGGAATGGCTGACCAATGATCCAGCCAACTGGGAATTCAT
CATTTGGGCAGGCAGGGGAAGCCTATGGAAAAGTTAGGAGAAGCATTGAA
GGAGCTGAAGGGGATGGTAGCTCCCAAAGAATGTGCCACAAAGCAAAGTG
CAAACACAGGCTGGTATGAGCCCAAGCATGTATGTAGCAATGGGCTGCCT
TGTTGGGCGCCAGTGGGGAAAGATGCATCTAATCCTATAGAGACTTGATG
CCCAGTTTTGGGGATTGCCAGAGGAGACATCCTCTCACAGGCAAAGGGGA
GGGGGATTGGGTAAGAACTCAGCAAGATAATTTTAAAAAGTAAAATACCT
TGTTACTAAAGTATTTTATGAATGAAACACTGTAATTTGAGGCTTTGTTT
TATTCCCGTGATGGTTTAACAAAGTATAAACTCTTCTCTTCTTTATTGAT
GTGAATTATATATAATCACTATCTAAGACTTGAAGATTTACCTTTATCCT
TATTTTTAAAGATCCAAAAAAAAAAAAAAACTCTTAACTATTTTGAATTG
CACTACATCACTTCAATGACTGAATAAATCTATACTAAGATACCTTTAGG
CTAAAGCGAA
TTCCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTACATAGTCGAAAGGACCAC
AGCACATAAAGATCTGGATGTCTCTGCTTCTGCTTTTCAAGTTTTTGGAT
TAAAGGTACAAAAGTAATTACAAATAAAAAATATTGAATACTGTTAAAGG
GTAGCCTATTGTGTGTCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGCGTGTGTGTGAAAATTTATTGGCAGTCTAGATCAGATATGAAC
CATTAAGGTATTAGAAGAATGCTCTTGTTCTGTGAAACATCTGCAAGCAG
AGGGTCTTGAGCCAGACTGTATCTCTGTTTGGCATCAAGACACTCTATCA
GGTTTATGGGATCTCTATGACAGGAGCTAGACATTTGTGTCTAACTTACC
ACTGACTTCTGAATCATACTCATAAGCCCTGATGTACCAACTCCTGATAT
AATTTATTATATTATCATTTGCTAATAATAGAACATGAGCATTCACTTCT
GTATTTGCCAGGCACTGTCATAGTCTCACAGGATACAGTTATATAAGGGT
CCTGTTAGCAAAACCTTGTAGGCATATGCTATAGCGTCTGGTCTTGGAGG
TTGTCTATGTAATTAAAACCTTGGTCAGGGTACTCCCCTAAATGGTTCTT
CTTTTTTTTCATCCCCGAATTTTTCTCTGTTACTCCTCTCCCTTTTTATT
CTGGTTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_b13.g1 MSMg01no531_b13.g1 CHROMAT_FILE:
MSMg01no531_b13.g1 PHD_FILE: MSMg01no531_b13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:38 2005
         (409 letters)



>mm_chr14_90893576_90894384
          Length = 809

 Score =  768 bits (397), Expect = 0.0
 Identities = 407/411 (99%), Gaps = 2/411 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtacatagtcgaaaggaccacagcacataaagatctggatgtctctgcttctgcttttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 agtacatagtcgaaaggaccacagcacataaagatctggatgtctctgcttctgcttttc 258

                                                                       
Query: 61  aagtttttggattaaaggtacaaaagtaattacaaataaaaaatattgaatactgttaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aagtttttggattaaaggtacaaaagtaattacaaataaaaaatattgaatactgttaaa 318

                                                                       
Query: 121 gggtagcctattgtgtgtctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg- 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 319 gggtagcctattgtgtgtctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 378

                                                                       
Query: 180 -cgtgtgtgtgaaaatttattggcagtctagatcagatatgaaccattaaggtattagaa 238
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gcgtgtgtgtgaaaatttattggcagtctagatcagatatgaaccattaaggtattagaa 438

                                                                       
Query: 239 gaatgctcttgttctgtgaaacatctgcaagcagagggtcttgagccagactgtatctct 298
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 439 gaatgctcttgttctgtgaaacatctgcaagcagaggggcttgagccagactgtatctct 498

                                                                       
Query: 299 gtttggcatcaagacactctatcaggtttatgggatctctatgacaggagctagacattt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gtttggcatcaagacactctatcaggtttatgggatctctatgacaggagctagacattt 558

                                                              
Query: 359 gtgtctaacttaccactgacttctgaatcatactcataagccctgatgtac 409
           |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 559 gtgtctaacttaccactgacttctgaatcagactcataagccctgatgtac 609


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)