BAC Information

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BAC

Clone NameMSMg01-531H13
Chromosome14 (Build37)
Map Location 85,326,408 - 85,327,017
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043280, LOC100043285, Pcdh17, 9630013A20Rik, LOC629794
Downstream geneLOC668603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531H13.T7 (MSMg01no531_h13.b1)MSMg01-531H13.TJ (MSMg01no531_h13.g1)
ACCAG599863AG599864
length755764
length of high quality
(start - end)
707 (49 - 755)613 (77 - 689)
definitionCHROMAT_FILE: MSMg01no531_h13.b1 PHD_FILE: MSMg01no531_h13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:06 2005CHROMAT_FILE: MSMg01no531_h13.g1 PHD_FILE: MSMg01no531_h13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAAAAATCTTCAGCTACTACTAAAAAAGGCTATATTCAACAA
AACTGGGAAATCTGGATGAAATGGACAATTTTCTAGAGAGATACCAAATA
CCAAAGTTAAATCAGATAAACCATCTAAACAGTCCCATAACCCCCCCACA
CCCAAAAAAAAAATAGAAGCACTCATTGAAAGCCTTCCAACCAATAAAAG
ACTGGACGATTTTAGTGCAGAATTCTATCAGACCTTCAAGAAAGACCTAA
GATCAATACTGTTCAAACTATTCCACAAAATAGAAACAGAAGGAACACTA
CATAGTTCATTCTATGAAGCCACAGTTACCCTGAGTATTCTCCGTTGTAG
ATGAAAAGGTTTCTGTCTAATCAGGAACTTTTCACAATTTCCTTTCATAG
ACAACTTTATATGAGATTTTTATTTGTATCATGTTTAATGTTCCAAATAG
ATTTAAAAAAACTGGTTGATCACAGATTACTTTTAGCTTCAGAAGATATC
ATGTGTATTTAAGAGGCATTTAGCAAATCAAAACAACCCTGAGATTCCAC
CTCACACCAGTCAGAATGGCTAAGTTCAAAAATTCAGGTGACAGCAGATG
CTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATT
GCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAG
TGGAC
TTCATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACACCCAGGGCTACACAGAG
AAACCATATATATATTTTTTTTTCCTACAAAACTCTGAAGTTGTTGTTGT
TATTATTATTATTGTTATTTGTTAAGTAACATTTAAGAAAAAGTGTCATG
GCGCATGTTATATGTAACTCAAGCACTCTGAATCTAAGACAAAAGGATTA
CCAGATGAAAATTGGCCAGTACTACATAGTAAGTTCAAGGCTACTGCGTG
CATTGTAGATATTATTACATTTACCTAATTAAAATTAGAAGTTAGCAGAA
TGATATGATGACTTTTAAATATAGTACAATACTACAAAGATATTTTTCCC
CGTGGTTAGTTTTTTTGGGAGGAATTTGTGTAACGTATTTTGATTATATT
CATCCCCCCAAACAGCTCTTAGATTTATCCCTTCTTCCCTATACTGTCAA
TTTTGCACATTAATTATTTACAAACATCGTTTCCAATTTGTGTTGTCCAT
ATGCCCTGGGTGATGTGCTTCTTGATTTATATCATGGAAGCAAGTCTCTT
GCCACCATGGCCTCCTTGTTGTGATAAACTGCATTCCTCTGTGATGTGAT
TTCATCTCTCCTTTATGTTTTGTTCTATCATATATTTGGTCACAAAGGCA
AGAATAGTTACTAATACACTGAGAATCTGTGTTTAAAAAAAAATACCAGA
GTAGGTTTAGTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_h13.g1 MSMg01no531_h13.g1 CHROMAT_FILE:
MSMg01no531_h13.g1 PHD_FILE: MSMg01no531_h13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:06 2005
         (613 letters)



>mm_chr14_85326206_85327217
          Length = 1012

 Score = 1120 bits (579), Expect = 0.0
 Identities = 604/613 (98%), Gaps = 3/613 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacacccagggctacacagagaaaccatatatatatttttttttcctacaaaactct 60
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 203 caggacacccagggctacacagagaaaccatatatata--tttttttcctacaaaactct 260

                                                                       
Query: 61  gaagttgttgttgttattattattattgttatttgttaagtaacatttaagaaaaagtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagttgttgttgttattattattattgttatttgttaagtaacatttaagaaaaagtgt 320

                                                                       
Query: 121 catggcgcatgttatatgtaactcaagcactctgaatctaagacaaaaggattaccagat 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catggcacatgttatatgtaactcaagcactctgaatctaagacaaaaggattaccagat 380

                                                                       
Query: 181 gaaaattggccagtactacatagtaagttcaaggctactgcgtgcattgtagatattatt 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 gaaaattggccagtactacatagtaaattcaaggctactgcgtgcattgtagatattatt 440

                                                                       
Query: 241 acatttacctaattaaaattagaagttagcagaatgatatgatgacttttaaatatagta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatttacctaattaaaattagaagttagcagaatgatatgatgacttttaaatatagta 500

                                                                       
Query: 301 caatactacaaagatatttttccccgtggttagtttttttgggaggaatttgtgtaacgt 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 caatactacaaagatatttttccccgtggttagtttttt-gggaggaatttgtgtaacgt 559

                                                                       
Query: 361 attttgattatattcatccccccaaacagctcttagatttatcccttcttccctatactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 560 attttgattatattcatccccccaaacagctcttagatttatcccttctcccctatactg 619

                                                                       
Query: 421 tcaattttgcacattaattatttacaaacatcgtttccaatttgtgttgtccatatgccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 620 tcaattttgcacattaattatttacaaacatcgtttccaatttgtgttgcccatatgccc 679

                                                                       
Query: 481 tgggtgatgtgcttcttgatttatatcatggaagcaagtctcttgccaccatggcctcct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgggtgatgtgcttcttgatttatatcatggaagcaagtctcttgccaccatggcctcct 739

                                                                       
Query: 541 tgttgtgataaactgcattcctctgtgatgtgatttcatctctcctttatgttttgttct 600
           ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 740 tgttgtgataaactgcattcctctgtgatgtgattgcatgtctcctttatgttttgttct 799

                        
Query: 601 atcatatatttgg 613
           |||||||||||||
Sbjct: 800 atcatatatttgg 812


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1012
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1002
Effective search space:   604206
Effective search space used:   604206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)