BAC Information

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BAC

Clone NameMSMg01-531L02
Chromosome14 (Build37)
Map Location 94,882,740 - 95,008,297
singlet/doubletdoublet
Overlap genenone
Upstream genePcdh9, LOC100043356
Downstream geneLOC100043783, LOC677613, LOC100043784, LOC382931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531L02.T7 (MSMg01no531_l02.b1)MSMg01-531L02.TJ (MSMg01no531_l02.g1)
ACCAG600030AG600031
length763766
length of high quality
(start - end)		709 (51 - 759)649 (82 - 730)
definitionCHROMAT_FILE: MSMg01no531_l02.b1 PHD_FILE: MSMg01no531_l02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:24 2005CHROMAT_FILE: MSMg01no531_l02.g1 PHD_FILE: MSMg01no531_l02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,882,740 - 94,883,443)(95,007,649 - 95,008,297)
sequence
NNNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCAGTTGAATACAATGAGTCAAAACAGTGTCAAGAATAAC
TTTGTGGCAGTGGGGGCTTTTTGAAGAATTCCAGAAAGCCAAGTGAGACA
GGAAGGACTCAGATAAGATACATCTGTCAAGAGCATGCCTACAGACTGCT
ACATCCTCCAAGCCCCAGTTCTTCATGTCCCCACCACTCCATCACTTCCT
CTGGTATTGGCTTTTCCAAAAGACCTGAAAGAAACAAAACTTGGCACATG
GTGTAAGAGGTAGTTCACTTGTCAAAGGTTATAAGATGTGGGAGTTGTTG
CAGCACGATTGGTACTGTTAAAATTGATACTGATGGAATATGAGGAAGAT
GATTCCTTTCTCTGTGGCACACCAGGATGCACAGAAGAGAAACCCCATTC
AGCATGTATATAATCTTGGGTCTCCCTAAGTGGCTTATTTCCAACAGCCA
GTCCTCACCTTGTAAAATTTTCACAAACTTCACAATAACACATGTTTGCA
ACTGAGGATTCAAACCATAAGTGAACAGATTACATTTGTTTATTTAATTC
ATGGAAAGAACTTTCAGTGATTCATGCTGACATGAAGTATTTAACATAAC
ATAATCATAACAATATTAAGTAATATTTATTTATTATAATTATTCCCTGT
TGGAATTTCTAAGGGGAAATCACAAAACAACAAATAATGTGGTGTTAGAG
CTAGAGAAAGAGN

CCCCCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGATGAGTTTATGTGCACA
AGTTTATACACTTGTGTGTATGTGCATATATATATTCTTAATTTTTTTTT
TTTGTTATTTTCCAAGTACCTCAGGTCTGGAAAAAAAAAACAATTGACCA
GTGGAGACAATTCAATCCACCAAGGTAGAAATAATTATAAAAGCTTGATG
TATAAAATTTATGTAAGCTAATTATGAAGATACATGAAAATATTTTAATA
GAATAAATTGGTTAGTGCACTTAAAATATAGAAAAGTACTTTCTAGTGCA
CTGAGGATAATTGTTTGCTAAAAACTCCACATTTATAAAAATGAATTGTT
GACTTTTTAAACATATTAAAAATTCTATTAGTTTTTGCTTCCCATTGTTT
TTGATGTGTTACAATACAGGAGAAAATGTAAATACAAGCTAGTTATAGGA
ACTTAACAAAGTCTCACGGAGTATTTTTTTTTAAATCCTGGAGTAGTTTA
TATTATTCACTATTATTTCAATGATTAAGGGCACACACTAGTACTGTGGT
CTTTACTAAGGTTTAAAACAAAACATGCTCTCCCATGCAGTGCACCCTAA
AAATATCTGTACAGACATTTCAATAGAAGATTAAAATTGTGCACATTCTA
GATTTATTATTATATTGGGTAACAAACATCATAATAAGCATTTTTCACCT
GAATGAATACTTGAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_l02.b1 MSMg01no531_l02.b1 CHROMAT_FILE:
MSMg01no531_l02.b1 PHD_FILE: MSMg01no531_l02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:24 2005
         (709 letters)



>mm_chr14_94882536_94883644
          Length = 1109

 Score = 1361 bits (704), Expect = 0.0
 Identities = 704/704 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcagttgaatacaatgagtcaaaacagtgtcaagaataactttgtggcagtggg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcagttgaatacaatgagtcaaaacagtgtcaagaataactttgtggcagtggg 264

                                                                       
Query: 65  ggctttttgaagaattccagaaagccaagtgagacaggaaggactcagataagatacatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggctttttgaagaattccagaaagccaagtgagacaggaaggactcagataagatacatc 324

                                                                       
Query: 125 tgtcaagagcatgcctacagactgctacatcctccaagccccagttcttcatgtccccac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtcaagagcatgcctacagactgctacatcctccaagccccagttcttcatgtccccac 384

                                                                       
Query: 185 cactccatcacttcctctggtattggcttttccaaaagacctgaaagaaacaaaacttgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cactccatcacttcctctggtattggcttttccaaaagacctgaaagaaacaaaacttgg 444

                                                                       
Query: 245 cacatggtgtaagaggtagttcacttgtcaaaggttataagatgtgggagttgttgcagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacatggtgtaagaggtagttcacttgtcaaaggttataagatgtgggagttgttgcagc 504

                                                                       
Query: 305 acgattggtactgttaaaattgatactgatggaatatgaggaagatgattcctttctctg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acgattggtactgttaaaattgatactgatggaatatgaggaagatgattcctttctctg 564

                                                                       
Query: 365 tggcacaccaggatgcacagaagagaaaccccattcagcatgtatataatcttgggtctc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tggcacaccaggatgcacagaagagaaaccccattcagcatgtatataatcttgggtctc 624

                                                                       
Query: 425 cctaagtggcttatttccaacagccagtcctcaccttgtaaaattttcacaaacttcaca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cctaagtggcttatttccaacagccagtcctcaccttgtaaaattttcacaaacttcaca 684

                                                                       
Query: 485 ataacacatgtttgcaactgaggattcaaaccataagtgaacagattacatttgtttatt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ataacacatgtttgcaactgaggattcaaaccataagtgaacagattacatttgtttatt 744

                                                                       
Query: 545 taattcatggaaagaactttcagtgattcatgctgacatgaagtatttaacataacataa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 taattcatggaaagaactttcagtgattcatgctgacatgaagtatttaacataacataa 804

                                                                       
Query: 605 tcataacaatattaagtaatatttatttattataattattccctgttggaatttctaagg 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tcataacaatattaagtaatatttatttattataattattccctgttggaatttctaagg 864

                                                       
Query: 665 ggaaatcacaaaacaacaaataatgtggtgttagagctagagaa 708
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 ggaaatcacaaaacaacaaataatgtggtgttagagctagagaa 908


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 709
Length of database: 1109
Length adjustment: 10
Effective length of query: 699
Effective length of database: 1099
Effective search space:   768201
Effective search space used:   768201
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no531_l02.g1 MSMg01no531_l02.g1 CHROMAT_FILE:
MSMg01no531_l02.g1 PHD_FILE: MSMg01no531_l02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:24 2005
         (649 letters)



>mm_chr14_95007369_95008417
          Length = 1049

 Score = 1255 bits (649), Expect = 0.0
 Identities = 649/649 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatgagtttatgtgcacaagtttatacacttgtgtgtatgtgcatatatatattcttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 agatgagtttatgtgcacaagtttatacacttgtgtgtatgtgcatatatatattcttaa 870

                                                                       
Query: 61  ttttttttttttgttattttccaagtacctcaggtctggaaaaaaaaaacaattgaccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 ttttttttttttgttattttccaagtacctcaggtctggaaaaaaaaaacaattgaccag 810

                                                                       
Query: 121 tggagacaattcaatccaccaaggtagaaataattataaaagcttgatgtataaaattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 tggagacaattcaatccaccaaggtagaaataattataaaagcttgatgtataaaattta 750

                                                                       
Query: 181 tgtaagctaattatgaagatacatgaaaatattttaatagaataaattggttagtgcact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 tgtaagctaattatgaagatacatgaaaatattttaatagaataaattggttagtgcact 690

                                                                       
Query: 241 taaaatatagaaaagtactttctagtgcactgaggataattgtttgctaaaaactccaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 taaaatatagaaaagtactttctagtgcactgaggataattgtttgctaaaaactccaca 630

                                                                       
Query: 301 tttataaaaatgaattgttgactttttaaacatattaaaaattctattagtttttgcttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tttataaaaatgaattgttgactttttaaacatattaaaaattctattagtttttgcttc 570

                                                                       
Query: 361 ccattgtttttgatgtgttacaatacaggagaaaatgtaaatacaagctagttataggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ccattgtttttgatgtgttacaatacaggagaaaatgtaaatacaagctagttataggaa 510

                                                                       
Query: 421 cttaacaaagtctcacggagtatttttttttaaatcctggagtagtttatattattcact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 cttaacaaagtctcacggagtatttttttttaaatcctggagtagtttatattattcact 450

                                                                       
Query: 481 attatttcaatgattaagggcacacactagtactgtggtctttactaaggtttaaaacaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 attatttcaatgattaagggcacacactagtactgtggtctttactaaggtttaaaacaa 390

                                                                       
Query: 541 aacatgctctcccatgcagtgcaccctaaaaatatctgtacagacatttcaatagaagat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aacatgctctcccatgcagtgcaccctaaaaatatctgtacagacatttcaatagaagat 330

                                                            
Query: 601 taaaattgtgcacattctagatttattattatattgggtaacaaacatc 649
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 taaaattgtgcacattctagatttattattatattgggtaacaaacatc 281


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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