Query= MSMg01no531_p12.b1 MSMg01no531_p12.b1 CHROMAT_FILE:
MSMg01no531_p12.b1 PHD_FILE: MSMg01no531_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:46 2005
(604 letters)
>mm_chr14_50292636_50293639
Length = 1004
Score = 975 bits (504), Expect = 0.0
Identities = 514/522 (98%), Gaps = 8/522 (1%)
Strand = Plus / Minus
Query: 91 taaatatgacctttgagccccttcagctttcatgaacttcagttcctatatttttggaga 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1004 taaatatgacctttgagccccttcagctttcatgaacttcagttcctatatttttggaga 945
Query: 151 caattccagcatacccaagtatgaaaaagaaaatagcatttacttctgaaaaaaatatgg 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944 caattccagcatacccaagtatgaaaaagaaaatagcatttacttctgaaaaaaatatgg 885
Query: 211 aggcatcttctagtctctcaaaggtg--------tgtgtgtgtgtgtgtgtgtgtgtgtg 262
|||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 884 aggcatcttctagtctctcaaaggtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtg 825
Query: 263 tgtgtgtgtgtgtgtgtatgctcattctctgtgtctttcaacaatgtttcaaataaatta 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 tgtgtgtgtgtgtgtgtatgctcattctctgtgtctttcaacaatgtttcaaataaatta 765
Query: 323 ctttaaactaatgaagcctctattaagctctgaagaaaattctatataacaccaatgacg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 ctttaaactaatgaagcctctattaagctctgaagaaaattctatataacaccaatgacg 705
Query: 383 ttggtttagcctaaggtctaagttaatacttaagatttgactgcctttcttgatttgtga 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ttggtttagcctaaggtctaagttaatacttaagatttgactgcctttcttgatttgtga 645
Query: 443 aaaatggtatgaaactctcttatcttctgacaagaaaaaccaaagtttagtatctctgaa 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 aaaatggtatgaaactctcttatcttctgacaagaaaaaccaaagtttagtatctctgaa 585
Query: 503 aggcatctccctttaaggccaggctctaagaagaccatgtcagtggctgcttacgtagcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 aggcatctccctttaaggccaggctctaagaagaccatgtcagtggctgcttacgtagcc 525
Query: 563 tagggagtcacataagttatgctatttccatatcatactgag 604
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tagggagtcacataagttatgctatttccatatcatactgag 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no531_p12.g1 MSMg01no531_p12.g1 CHROMAT_FILE:
MSMg01no531_p12.g1 PHD_FILE: MSMg01no531_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:46 2005
(677 letters)
>mm_chr14_50245073_50246149
Length = 1077
Score = 1247 bits (645), Expect = 0.0
Identities = 677/705 (96%), Gaps = 28/705 (3%)
Strand = Plus / Plus
Query: 1 agtcccccagaactctggtgaaaaagtctggtgtggtgggatatgcttttagtctcagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 agtcccccagaactctggtgaaaaagtctggtgtggtgggatatgcttttagtctcagca 232
Query: 61 ctgggagaaatggaagcaggaggattactggagctcactgataatccagtgtagtcccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 ctgggagaaatggaagcaggaggattactggagctcactgataatccagtgtagtcccat 292
Query: 121 tagtgaactcatggcagtaagagactattttatagaaggtggatagccatcctgaggatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tagtgaactcatggcagtaagagactattttatagaaggtggatagccatcctgaggatg 352
Query: 181 acacctaaagttgtctattggcctacacacacacacacacacacacacacacacacac-- 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 acacctaaagttgtctattggcctacacacacacacacacacacacacacacacacacac 412
Query: 239 ------------------------gcacacaca--tgcacatgcatttgttgcataagca 272
||||||||| |||||||||||||||||||||||||
Sbjct: 413 acacacacacacacacacacacacgcacacacacatgcacatgcatttgttgcataagca 472
Query: 273 tacacattatatacatgtacatgtgtgcacacacacatactcctcatgcatgcccgaaaa 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tacacattatatacatgtacatgtgtgcacacacacatactcctcatgcatgcccgaaaa 532
Query: 333 taatgcctttaagctcagtgatgaaaaaactaatttataaaatcagagcataacttgata 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 taatgcctttaagctcagtgatgaaaaaactaatttataaaatcagagcataacttgata 592
Query: 393 gattatttcttcctgtatacattattaatatagaatattaaactggtttttgaaaaagta 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gattatttcttcctgtatacattattaatatagaatattaaactggtttttgaaaaagta 652
Query: 453 gtggcttagactggaccctgtgtgtagatgctcagtacacaatatccagaaagtgtgaat 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gtggcttagactggaccctgtgtgtagatgctcagtacacaatatccagaaagtgtgaat 712
Query: 513 gaatcaaaagaaccagaaaagagccaggatatcagtggacaggccacaggtaacagtctt 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 gaatcaaaagaaccagaaaagagccaggatatcagtggacaggccacaggtaacagtctt 772
Query: 573 ccatgtcacataatcctcatacacaaggcagacactccctgcagggtctaatcaccacag 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 ccatgtcacataatcctcatacacaaggcagacactccctgcagggtctaatcaccacag 832
Query: 633 tgagatgctgacaaaagctgcaggcagaactgctactaaataggc 677
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 tgagatgctgacaaaagctgcaggcagaactgctactaaataggc 877
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 80
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space: 711689
Effective search space used: 711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
