BAC Information

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BAC

Clone NameMSMg01-534E17
Chromosome14 (Build37)
Map Location 27,924,276 - 28,081,829
singlet/doubletdoublet
Overlap geneLOC665333, Arhgef3
Upstream geneLOC100039227, LOC100039503, LOC100039246, LOC100039257, LOC100039280, LOC100039293, LOC100039527, LOC100039538, 4933413J09Rik, Slmap, LOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik, Dnahc7c, Asb14, Appl1, Hesx1, Il17rd
Downstream geneLOC100040147, Ccdc66, LOC665370, Erc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534E17.T7 (MSMg01no534_e17.b1)MSMg01-534E17.TJ (MSMg01no534_e17.g1)
ACCAG602013AG602014
length783793
length of high quality
(start - end)		181 (316 - 496)585 (65 - 649)
definitionCHROMAT_FILE: MSMg01no534_e17.b1 PHD_FILE: MSMg01no534_e17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:45 2005CHROMAT_FILE: MSMg01no534_e17.g1 PHD_FILE: MSMg01no534_e17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,924,276 - 27,924,455)(28,081,245 - 28,081,829)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAATTCATTNT
TACGGTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTCTGTGTGTGTGTATGAGGTGCAGTCTCTTGTATTTAATATA
TAGCTCAGGAGATCTTGAACTCCTGTTCCCCCAAGTGCTGAAATACAGGT
GTGAGCCAACACATGTGCTCGTGGGTCTGTCTCAGCTAAGAGTCAAGTTG
CAGGGGAATGGTCTGTTTGGACTGAAGATGCAGCTCAGAAGAACAGCATT
TGCCTGGTTTTTTTACAGGCCATGGGTTTTATCCTGGGTACAGACACCAA
CTAAAGGATTCATGTCAAGGAAAATACTGACAAGTATGGTAAATGAAAAC
CACACACACTAACACCTCTGGGGGTAGGATTGTAGCAGGTCTTTGTGTAT
AGCCCTGTCTGTCTTGGAATTTGCTATGTATACCACACTGGCCTGCAATT
TAAGAGATCCTCCTGCCTCTGCCTCCCAAGTGCTTGGTAATAAGCCACCT
ATTTCCTCTCTCCCTTTTTTTTTCTCTTCATCTCCCTATACTTTGTTTTT
ATTTAATCTCCCCTATTTCCCCCCTCTATCTACTCAAAGTTTACGTTTCA
TTATCTTTCTTTCTCTTGACACACCCCTATCATTATTCCATTACCCCCAC
CACATCATTCTCCGCGTCCGATCTTTTATTTTTTTTCCACCCCCCTCTTT
CTTTTTTCTCCTTCTCTCAACACCCAGCTTTTG

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXACCGGTGGAAAAAACTCCTAGCTTTTTACATTACAA
ATGGTTCTTTAAAGGGCGGTACTCCTTAGAGGTCTTTCTCTCTGTCCCTC
TTCCTATTTCCCTCCCCCTCCCCCACACCTCTCATTCTAGAGTGAGTACC
AAAAGCAGGCCGTGTTGCCAGCGTTATGCTGACTGAATGGGAACCTGGCT
ACTGACCCAGAAAGATGCCCCTCTTATCTAGCAACTTCTTGTTCAACACA
CACATCCTGTGGCTGTCTCATCATTTAGGAAGTGGAGTCTAAACTGAGAA
GTACCTAACGCCCTACCCCTCACACCCACCACCAGGAGCCACTAATTGAA
ACCTACCTCCCCGCCCCCACACACTTTCCACTTATTCAGAGCAATAGGCA
CAAAACAACTCTTTAGCCAGTTCTGATATGTGCCTCAGTCCCTGCTATGG
AGGCAAGGGGGGCTGTTTGAGTCTTCATGTTATTGGCCAGTTTGGTGCAA
AATTATGAAATACCAACAGATCCACCACCTCTTCAGGACTGTTGCTGTAA
GGACTCTCCTGGACATTGCCACTTAAAAGCACAAAGACATAGTCCCTTAT
AGCCTAAACCACCGGCCAATCGATAAAGACCACTTCCTTATCAGAATAAC
TTATTCACTGGGCTTAGATATTTAGATATGGTTGCATTTATGGTGAACCG
GCTTCTCANGGGTGGGCTTCACCCACTACTTTATTCAGTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_e17.b1 MSMg01no534_e17.b1 CHROMAT_FILE:
MSMg01no534_e17.b1 PHD_FILE: MSMg01no534_e17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:45 2005
         (181 letters)



>mm_chr14_27924076_27924656
          Length = 581

 Score =  333 bits (172), Expect = 5e-96
 Identities = 178/180 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggccatgggttttatcctgggtacagacaccaactaaaggattcatgtcaaggaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggccatgggttttatcctgggtacagacaccaactaaaggattcatgtcaaggaaaat 260

                                                                       
Query: 61  actgacaagtatggtaaatgaaaaccacacacactaacacctctgggggtaggattgtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgacaagtatggtaaatgaaaaccacacacactaacacctctgggggtaggattgtag 320

                                                                       
Query: 121 caggtctttgtgtatagccctgtctgtcttggaatttgctatgtataccacactggcctg 180
           ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 321 caggtctttgtgtatagccctgtctgtcttggaatttgctatgtagaccagactggcctg 380


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 581
Length adjustment: 8
Effective length of query: 173
Effective length of database: 573
Effective search space:    99129
Effective search space used:    99129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no534_e17.g1 MSMg01no534_e17.g1 CHROMAT_FILE:
MSMg01no534_e17.g1 PHD_FILE: MSMg01no534_e17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:45 2005
         (585 letters)



>mm_chr14_28080921_28081905
          Length = 985

 Score = 1077 bits (557), Expect = 0.0
 Identities = 578/585 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   accggtggaaaaaactcctagctttttacattacaaatggttctttaaagggcggtactc 60
           ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 909 accggtggaaaaaactcctagctttttacatcacaaatggttctttaaaggggggtactc 850

                                                                       
Query: 61  cttagaggtctttctctctgtccctcttcctatttccctccccctcccccacacctctca 120
           ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 849 cttagaggtctttctctttgtccctcttcctctttccctccccctcccccacacctctca 790

                                                                       
Query: 121 ttctagagtgagtaccaaaagcaggccgtgttgccagcgttatgctgactgaatgggaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 ttctagagtgagtaccaaaagcaggccgtgttgccagcgttatgctgactgaatgggaac 730

                                                                       
Query: 181 ctggctactgacccagaaagatgcccctcttatctagcaacttcttgttcaacacacaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 729 ctggctactgacccagaaagatgcccctcttatctagcaacttcttgttcaacgcacaca 670

                                                                       
Query: 241 tcctgtggctgtctcatcatttaggaagtggagtctaaactgagaagtacctaacgccct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tcctgtggctgtctcatcatttaggaagtggagtctaaactgagaagtacctaacgccct 610

                                                                       
Query: 301 acccctcacacccaccaccaggagccactaattgaaacctacctccccgcccccacacac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 acccctcacacccaccaccaggagccactaattgaaacctacctccccgcccccacacac 550

                                                                       
Query: 361 tttccacttattcagagcaataggcacaaaacaactctttagccagttctgatatgtgcc 420
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 549 tttccacttattcagagcaataagcacaaaacaactctttagccagttctgatatgtgcc 490

                                                                       
Query: 421 tcagtccctgctatggaggcaaggggggctgtttgagtcttcatgttattggccagtttg 480
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 489 tcagtccctgctatggaggcaaggggggctgtttgagtcttcaggttattggccagtttg 430

                                                                       
Query: 481 gtgcaaaattatgaaataccaacagatccaccacctcttcaggactgttgctgtaaggac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gtgcaaaattatgaaataccaacagatccaccacctcttcaggactgttgctgtaaggac 370

                                                        
Query: 541 tctcctggacattgccacttaaaagcacaaagacatagtccctta 585
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tctcctggacattgccacttaaaagcacaaagacatagtccctta 325


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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