Query= MSMg01no534_n13.b1 MSMg01no534_n13.b1 CHROMAT_FILE:
MSMg01no534_n13.b1 PHD_FILE: MSMg01no534_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:29 2005
(550 letters)
>mm_chr14_51929847_51930794
Length = 948
Score = 750 bits (388), Expect = 0.0
Identities = 511/564 (90%), Gaps = 29/564 (5%)
Strand = Plus / Minus
Query: 1 acactaaaagtaaaaggaggaaaataagagtgttcacggccactgtgctgccgtggggtg 60
|||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||
Sbjct: 703 acactaaaagtaaaaggagggaaataagagtgttcgcggccactgtgctgctgtggggtg 644
Query: 61 tgctgctgctttatggagcctacagagctggctgaatgcctcacatccttcctcctgtga 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tgctgctgctttacggagcctacagagctggctgaatgcctcacatccttcctcctgtga 584
Query: 121 aatcaaccagatttacagtgtggctgtgtgaccca--tgttaccattggac-aggaggca 177
|||||||||| ||||||||| |||||||||||| |||||||| ||||| ||| ||||
Sbjct: 583 aatcaaccaggtttacagtgcaactgtgtgacccacgtgttaccactggacaagg-ggca 525
Query: 178 agtgatg------tg--catgccaagatagctgtggaatccagttcccctgggataagag 229
|| |||| || ||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 524 agagatgtacaaatgaacatgccaggatagcagtggaatccagttcccctgggataagag 465
Query: 230 aataaaacacaaagagcttaggtgaattgggatttgagattatgactcatagactcctta 289
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 aataaa--gcaaagagcttaggtgaattgggatttgagattatgactcatagactcctta 407
Query: 290 ggccttagagtattgctggacacagggctggatacaagggtcctgaaatgataatttttt 349
||||||||||||| |||||| ||| || |||| |||||||||||||||||||||
Sbjct: 406 ggccttagagtatggctggataca-----agacacaa--gtcctgaaatgataatttttt 354
Query: 350 cacttcctcacttttttcacttttttatag---aaaaactttttttattagtttcatttt 406
||||||||||||||||||||| |||||||| ||||| |||||||||||||| |||
Sbjct: 353 cacttcctcacttttttcactgttttatagaaaaaaaa----ttttattagtttca-ttt 299
Query: 407 tccggtggactttgccagaactttgtaactgaacattttacagatgaagacaaacaagtg 466
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tctgatggactttgccagaactttgtaactgaacattttacagatgaagacaaacaagtg 239
Query: 467 gattctgtgaagatccacctcctacctgggtagaggggtatttatgccaattagcgagga 526
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 238 gattctgtgaagatccacctcctacatgggtagaggggtatttatgccaatcagcgagga 179
Query: 527 gttaaaatgacctgtgacaaagaa 550
|||||| ||||||||||||||||
Sbjct: 178 gttaaagcgacctgtgacaaagaa 155
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 948
Length adjustment: 10
Effective length of query: 540
Effective length of database: 938
Effective search space: 506520
Effective search space used: 506520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_n13.g1 MSMg01no534_n13.g1 CHROMAT_FILE:
MSMg01no534_n13.g1 PHD_FILE: MSMg01no534_n13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:29 2005
(632 letters)
>mm_chr2_154041564_154042596
Length = 1033
Score = 1067 bits (552), Expect = 0.0
Identities = 605/634 (95%), Gaps = 23/634 (3%)
Strand = Plus / Minus
Query: 1 caggctagccagatctacatagtgagaacctgcctcaaacaaacaaacaaacaaacaaac 60
|||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 915 caggctagccagatctacatagtgagaacctgtctcaaacaaacaaacaaaca------- 863
Query: 61 gaacgaacaaacaaatcctaccaccc-catgacagcaacaaaacaacaaaacaacaaaac 119
||||||||||||||||||||| || |||||||||||||||||| ||||||||
Sbjct: 862 -----aacaaacaaatcctaccacccaca--acagcaacaaaacaacaa---aacaaaac 813
Query: 120 aacaacaacaacaacaacaacaacgtaaaacaaaacaaagtgaaaccccaaaggtgaaga 179
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 aa----aacaacaacaacaacaacgtaaaacaaaacaaagtgaaaccccaaaggtgaaga 757
Query: 180 caagagacagcccaattcaggctagggacttgggaaactggggagcagaggagaggggct 239
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 caagagacagcccagttcaggctagggacttgggaaactggggagcagaggagaggggct 697
Query: 240 gcccagggtcagcagaggggctttgttttataatagagagtagtgcagagttttacatgg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 gcccagggtcagcagaggggctttgttttataatagagagtagtgcagagttttacatgg 637
Query: 300 ttggtgttctcagctatatctgcatacagtaggtgctcatacgggagcctgcaggctaga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ttggtgttctcagctatatctgcatacagtaggtgctcatacgggagcctgcaggctaga 577
Query: 360 ctttggagggcagtgagaagaccaccagcccaccccagggcttcctgtgatatctcgttc 419
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 576 ctttggagggtagtgagaagaccaccagcctaccccagggcttcctgtgatatctcgttc 517
Query: 420 taagcaaatcctggccagtgtctcattttagaacggcccattctggcccctgttccctta 479
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 taagcaaattctggccagtgtctcattttagaacggcccattctggcccctgttccctta 457
Query: 480 gagataatctggtaatacttacatcgaatagtttgatatctgagatcatcagcttgatgc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gagataatctggtaatacttacatcgaatagtttgatatctgagatcatcagcttgatgc 397
Query: 540 gctcaatactgtaacagaagatgccc-atgagagtggtcccttggaatctctgtcaataa 598
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 396 gctcaatactgtaacagaagatgcccaatgagagtggtcccttggaatctctgtcaataa 337
Query: 599 ctatttatggaggacctactatgtgcaaggcaca 632
||||||||||||||||| ||||||||||||||||
Sbjct: 336 ctatttatggaggacctgctatgtgcaaggcaca 303
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1033
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1023
Effective search space: 636306
Effective search space used: 636306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
