BAC Information

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BAC

Clone NameMSMg01-535E16
Chromosome14 (Build37)
Map Location 100,044,784 - 100,045,361
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672
Downstream geneEG546623, Klf12, LOC100043413, EG668683, EG668684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535E16.T7 (MSMg01no535_e16.b1)MSMg01-535E16.TJ (MSMg01no535_e16.g1)
ACCAG602775AG602776
length746754
length of high quality
(start - end)
668 (49 - 716)629 (77 - 705)
definitionCHROMAT_FILE: MSMg01no535_e16.b1 PHD_FILE: MSMg01no535_e16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:04 2005CHROMAT_FILE: MSMg01no535_e16.g1 PHD_FILE: MSMg01no535_e16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTTGGCTGGTGGTACAGTTTGTAGTAGGTCTTTTGTTAAAT
GGTCTATGGCTCGTCACGAGAACATTGTCAGCTCTGACCAGAGATTTTCA
TATAGACTATATACATATGCACAGACTTCTATGTATTATGTGTAGTTTTA
GGTTGATGATAATAATGATGATGATGATAATGTTGCTGCCGCCGCCTATG
CCTCTTCCGTCCTCCTCCTTCTGTGCTTACCTTCCCCTCCAATATCTCCC
TTCAAGTCACGTGTATCCCTCTCCTCCCCTCGTAATTGTGCCTCTCCTCA
CATTGTCCTGTTATGCTTTGCTGGTTTCTGCTGATGCTCCATGTTATACA
CTTATATCCGAGAGGGATTTGGAGCTGGGAACTACAGGTGAGAGAGAATA
TGGCTCTGGGTTACCTCACTTCATGTGATTTTTTTTTTCTGAGTCCATTT
ACCTGCAAAGTTCATAGCTTAATTATATATATATATATCTGAATAGTAGT
CTGCATCTATTTGTTAGTTGAAGGACACATCGGATGTTTCCATCTTCCAG
ATATTGTGTGAACAGAGCAGCAGTGAACACGGCTGAGCGAGTGTCTGTGA
GGTAGGATATTGGCTCCTGAGTACCTGTATTGCTAGGTTATGTGCTACAT
GTATGTTTAGCCTTGTGAAGGTTCTCCACACCGATTTCCAGCGTGG
AAACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTTTCGTGGATCTCTAATG
TTTGTAGAGATCTCTGTGGAAACAAACATTCAGAGAGTCTTTGTAGATAT
GTCCAGGAATAATTAAGGTAGGAGGTACCTACCTCTTTAAAAAGGAAAAG
AAAAAGAAAAGCCAGGTTACACTTAAGGAGTCCCTAATTGGTCCACTTGT
GAAGATGACTGCTTGTCCTAGCACGTCTCCTTTTTCTCTTAAACTGAGAA
AAACACACACACACACACACACACACAAAGGGAAAGTCAACTGAATCAGG
ACAGAAATTCATTTTTACAGCTGAATAAGCTTTGTCTCTGGTTGTTTTAA
AAATGAAATAAATGGAAAAATATTTGTTGGAGAATAATAAACACACCCAG
GTATTTGCTGCTATTGCAAGGCTGGGCTGAGAGGGAAGTTGCCCCGTAAG
ACCACCTGTGTTTCTTGGTTCGAGCCCAGCAGAGCTTCAGAATTTGTATA
GTTGGGTGCAGTCCAGCAACCTGGCCGCATTCTTGGATCTCTTACTCAAC
ATGAGGCACCAAGATCACTGGAAACTTTAACAGAAACATCAACAACTGGA
AGATCCAGTGAGTCTATGGTTTGACCCCCGGCTGCACACCCTCACATCAA
TCTATTTCGAATCTTCTGGGCAATTAGCTCTAGGCGAGGGGGTGGGAAGG
GGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_e16.g1 MSMg01no535_e16.g1 CHROMAT_FILE:
MSMg01no535_e16.g1 PHD_FILE: MSMg01no535_e16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:04 2005
         (629 letters)



>mm_chr14_100044333_100045361
          Length = 1029

 Score = 1118 bits (578), Expect = 0.0
 Identities = 578/578 (100%)
 Strand = Plus / Minus

                                                                        
Query: 52   attcagagagtctttgtagatatgtccaggaataattaaggtaggaggtacctacctctt 111
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 attcagagagtctttgtagatatgtccaggaataattaaggtaggaggtacctacctctt 970

                                                                        
Query: 112  taaaaaggaaaagaaaaagaaaagccaggttacacttaaggagtccctaattggtccact 171
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969  taaaaaggaaaagaaaaagaaaagccaggttacacttaaggagtccctaattggtccact 910

                                                                        
Query: 172  tgtgaagatgactgcttgtcctagcacgtctcctttttctcttaaactgagaaaaacaca 231
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909  tgtgaagatgactgcttgtcctagcacgtctcctttttctcttaaactgagaaaaacaca 850

                                                                        
Query: 232  cacacacacacacacacacaaagggaaagtcaactgaatcaggacagaaattcattttta 291
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849  cacacacacacacacacacaaagggaaagtcaactgaatcaggacagaaattcattttta 790

                                                                        
Query: 292  cagctgaataagctttgtctctggttgttttaaaaatgaaataaatggaaaaatatttgt 351
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789  cagctgaataagctttgtctctggttgttttaaaaatgaaataaatggaaaaatatttgt 730

                                                                        
Query: 352  tggagaataataaacacacccaggtatttgctgctattgcaaggctgggctgagagggaa 411
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729  tggagaataataaacacacccaggtatttgctgctattgcaaggctgggctgagagggaa 670

                                                                        
Query: 412  gttgccccgtaagaccacctgtgtttcttggttcgagcccagcagagcttcagaatttgt 471
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669  gttgccccgtaagaccacctgtgtttcttggttcgagcccagcagagcttcagaatttgt 610

                                                                        
Query: 472  atagttgggtgcagtccagcaacctggccgcattcttggatctcttactcaacatgaggc 531
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609  atagttgggtgcagtccagcaacctggccgcattcttggatctcttactcaacatgaggc 550

                                                                        
Query: 532  accaagatcactggaaactttaacagaaacatcaacaactggaagatccagtgagtctat 591
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549  accaagatcactggaaactttaacagaaacatcaacaactggaagatccagtgagtctat 490

                                                  
Query: 592  ggtttgacccccggctgcacaccctcacatcaatctat 629
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 489  ggtttgacccccggctgcacaccctcacatcaatctat 452


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)