Query= MSMg01no535_j16.b1 MSMg01no535_j16.b1 CHROMAT_FILE:
MSMg01no535_j16.b1 PHD_FILE: MSMg01no535_j16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:28 2005
(624 letters)
>mm_chr14_16924040_16925061
Length = 1022
Score = 1127 bits (583), Expect = 0.0
Identities = 613/625 (98%), Gaps = 8/625 (1%)
Strand = Plus / Plus
Query: 5 gaattcaacccaaggagacttagaacttgaatacagttgccacacttagtttagctgaac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaacccaaggagacttagaacttgaatacagttgccacacttagtttagctgaac 264
Query: 65 ttttattacagaagttctagaactggattcacccttaagtttagtcccagttgaataaca 124
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 265 ttttattacagaagttgtagaactggactcacccttaagtttagtcccagttgaataaca 324
Query: 125 ggccctcccctcagaaaccctaatcactggcataggtcattcctaagaagcaagaaacca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggccctcccctcagaaaccctaatcactggcataggtcattcctaagaagcaagaaacca 384
Query: 185 tggcagttcctttcaggtgagggtgattcctgcccagagcctgaaccatgagccagcatc 244
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 385 tggcagttcctttcaggtgagggtgattcctgcccagaggctgaaccatgagccagcatc 444
Query: 245 acggaaagctctcaggatcagggaggatttgaacagcactcagcaccatcctcagagtag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acggaaagctctcaggatcagggaggatttgaacagcactcagcaccatcctcagagtag 504
Query: 305 acagacacagactcagataatttacggcctttgagagaaa-tcctggagatgcagttctg 363
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 505 acagacacagactcagataatttacggcctttgag-gaaaatcctggagatgcagttctg 563
Query: 364 ttctagagttcttgcctgccatccacaaggctgcggactcattctcagaatggggaaaaa 423
||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||
Sbjct: 564 ttctagagttcttgcctgccatccacaaggctgtggactcattctcaga-tggg-aaaaa 621
Query: 424 aaggcctgattttggttctgaatacccatataaggcatctcacaaccacctataattcta 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aaggcctgattttggttctgaatacccatataaggcatctcacaaccacctataattcta 681
Query: 484 gttccaagagatctcacatcttctggattaaca----cacacacacacacacacacacac 539
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 682 gttccaagagatctcacatcttctggattaacatacacacacacacacacacacacacac 741
Query: 540 acacacacacacacacagcacacagcacacggcacacacacaaatcaaataataaagatg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 acacacacacacacacagcacacagcacacggcacacacacaaatcaaataataaagatg 801
Query: 600 aaatatttaaagggaaaggatgcca 624
|||||||||||||||||||||||||
Sbjct: 802 aaatatttaaagggaaaggatgcca 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1022
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1012
Effective search space: 621368
Effective search space used: 621368
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_j16.g1 MSMg01no535_j16.g1 CHROMAT_FILE:
MSMg01no535_j16.g1 PHD_FILE: MSMg01no535_j16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:28 2005
(643 letters)
>mm_chr14_17004908_17005950
Length = 1043
Score = 1236 bits (639), Expect = 0.0
Identities = 642/643 (99%)
Strand = Plus / Minus
Query: 1 cttgttgtaaacaaaagttttgtagtgtttgtcaggacagtctaatattaaatgtttctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 cttgttgtaaacaaaagttttgtagtgtttgtcaggacagtctaatattaaatgtttctt 784
Query: 61 aaaatatgaagattgaagagttactgactgtgtcctggctggtacatcttggatttaggg 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 acaatatgaagattgaagagttactgactgtgtcctggctggtacatcttggatttaggg 724
Query: 121 ctaagacagacacagcctcaaatatgggatccttatgtggccccacagacactgtcacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ctaagacagacacagcctcaaatatgggatccttatgtggccccacagacactgtcacat 664
Query: 181 atgtgaaatcacaaaggggttccttaatggaggtatataaaatgagacctcgagactatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 atgtgaaatcacaaaggggttccttaatggaggtatataaaatgagacctcgagactatg 604
Query: 241 taatggcatttgtcactttttgtagatggcttcatacacttagtgaggttccaagaaatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 taatggcatttgtcactttttgtagatggcttcatacacttagtgaggttccaagaaatc 544
Query: 301 agttttccattctgtgcctcagtgtaccccatttgatgcttgaattcacattcatcacac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 agttttccattctgtgcctcagtgtaccccatttgatgcttgaattcacattcatcacac 484
Query: 361 acattttaaaaaacagaatataatctatcaatttattataaaatatttgctttcatttaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 acattttaaaaaacagaatataatctatcaatttattataaaatatttgctttcatttaa 424
Query: 421 aagcgacagttgtactgaagttctgacattttttattgctattttagattttctattttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aagcgacagttgtactgaagttctgacattttttattgctattttagattttctattttc 364
Query: 481 tttcaatcaattgaattttagcaagatagctttctttttatgtgtttttgtgtgggctag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tttcaatcaattgaattttagcaagatagctttctttttatgtgtttttgtgtgggctag 304
Query: 541 ttttttcccctttggttatgtttttattcaaatagactgtctctattggctctctggaat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ttttttcccctttggttatgtttttattcaaatagactgtctctattggctctctggaat 244
Query: 601 gaaacaaattttaatcgtttatgcagccggcttttttccttct 643
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gaaacaaattttaatcgtttatgcagccggcttttttccttct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
